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    • pycellin

      Public
      Graph-based framework to manipulate and analyze cell lineages from cell tracking data
      Python
      BSD 3-Clause "New" or "Revised" License
      02471Updated Apr 16, 2026Apr 16, 2026
    • envappose

      Public
      Handle environments created with appose in Fiji
      Java
      GNU General Public License v2.0
      0000Updated Apr 15, 2026Apr 15, 2026
    • Fiji plugin to use Cellpose with Appose
      Java
      BSD 3-Clause "New" or "Revised" License
      0620Updated Apr 15, 2026Apr 15, 2026
    • Dextrusion as a Fiji plugin thanks to Appose
      Java
      GNU General Public License v3.0
      0000Updated Apr 10, 2026Apr 10, 2026
    • Automatic detection of epithelial cell events, in particular cell extrusion
      PureBasic
      BSD 3-Clause "New" or "Revised" License
      0000Updated Apr 10, 2026Apr 10, 2026
    • Big-fish in Fiji through appose
      Java
      GNU Affero General Public License v3.0
      0000Updated Apr 9, 2026Apr 9, 2026
    • Epicure

      Public
      Napari plugin to ease manual correction of epithelial movie segmentation
      Python
      BSD 3-Clause "New" or "Revised" License
      2910Updated Apr 7, 2026Apr 7, 2026
    • Plugin to run epyseg within napari
      Python
      BSD 3-Clause "New" or "Revised" License
      0200Updated Mar 24, 2026Mar 24, 2026
    • yolo-appose

      Public
      Fiji plugin for Yolo image detection via Appose
      Java
      0100Updated Mar 11, 2026Mar 11, 2026
    • Java
      GNU Lesser General Public License v3.0
      0100Updated Mar 6, 2026Mar 6, 2026
    • .github

      Public
      0000Updated Feb 18, 2026Feb 18, 2026
    • DeProj

      Public
      MATLAB
      BSD 3-Clause "New" or "Revised" License
      0000Updated Feb 14, 2026Feb 14, 2026
    • Notebooks and scripts for Bacteria Methods paper
      Jupyter Notebook
      0000Updated Dec 10, 2025Dec 10, 2025
    • Retrieves the height map from 2D denoised projected epithelia image
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      0000Updated Dec 4, 2025Dec 4, 2025
    • Teaching materials and outline for the Pasteur Bioimage Analysis vour
      Jupyter Notebook
      Creative Commons Attribution 4.0 International
      01600Updated Jun 2, 2025Jun 2, 2025
    • Java
      BSD 3-Clause "New" or "Revised" License
      0300Updated Sep 25, 2023Sep 25, 2023
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