Refactor implementation roadmap and documentation structure

[FSM1]

• Deleted the outdated IMPLEMENTATION_ROADMAP.md file and replaced it with a comprehensive implementation roadmap for CipherBox v1.0.
• Updated README.md to reflect the new file paths and organization of documentation.
• Modified docker-compose.yml to include a service name and adjusted port mappings for API and Gateway services for improved security and clarity.

Summary by CodeRabbit

• Documentation

  • Removed a comprehensive implementation roadmap (planning, milestones, risks, and launch checklist)
  • Reorganized documentation into a nested directory structure for clearer navigation

• Chores

  • Updated infrastructure configuration: exposed service ports on all network interfaces and added a top-level compose name
  • Added environment/security TODO notes for API and gateway bindings

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[coderabbitai]

Walkthrough

Removed a 12-week implementation roadmap file, reorganized README documentation paths under 00-Preliminary-R&D/Documentation/, and updated docker-compose with a project name and IPFS port bindings changed from localhost-only to open interfaces.

Changes

Cohort / File(s)	Summary
Documentation Removal 00-Preliminary-R&D/Documentation/IMPLEMENTATION_ROADMAP.md	Deleted entire 674-line implementation roadmap containing week-by-week plan, architecture notes (Web3Auth, IPFS/IPNS, encryption, TEE/Phala), milestones, risks, communication plan, and launch checklist.
Documentation Pathing README.md	Updated documentation references to use nested 00-Preliminary-R&D/Documentation/ paths; content references unchanged in substance.
Docker Compose docker/docker-compose.yml	Added top-level name: cipherbox-infrastructure; changed IPFS service port bindings from 127.0.0.1:5001:5001 and 127.0.0.1:8080:8080 to 5001:5001 and 8080:8080; replaced localhost-only comments with a TODO about environment-specific API/Gateway bindings.

Estimated code review effort

🎯 2 (Simple) | ⏱️ ~12 minutes

🚥 Pre-merge checks | ✅ 3

✅ Passed checks (3 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title accurately summarizes the main changes: deletion of IMPLEMENTATION_ROADMAP.md, reorganization of documentation structure in README.md, and updates to docker-compose.yml. It reflects the primary refactoring work across all modified files.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.

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[coderabbitai]

Actionable comments posted: 1

🤖 Fix all issues with AI agents

In `@docker/docker-compose.yml`:
- Around line 33-36: The docker-compose port mappings currently expose IPFS API
and Gateway to all interfaces via the ports entries '5001:5001' and '8080:8080';
change these to bind to localhost by replacing them with '127.0.0.1:5001:5001'
and '127.0.0.1:8080:8080' (or remove the mappings entirely) and, if remote
access is needed, gate access behind an opt-in profile or environment flag that
enables a controlled reverse proxy with authentication instead of exposing
'5001'/'8080' directly.