ACMTR：Attention-guided combined multi-scale transformer-based network for 3D CT pelvic functional bone marrow segmentation

Code for paper “ACMTR: Attention-guided, combined multi-scale, transformer reasoning-based network for 3D CT pelvic functional bone marrow segmentation” Please read our published version at the following link: https://doi.org/10.1016/j.bspc.2022.104522

Parts of codes are borrowed from nnFormer, about dataset you can follow the settings in nnUNet for path configurations and preprocessing procedures nnUNet.

Training

python ./nnformer/run/run_training.py 3d_fullres nnFormerTrainerV2_PelvicTumour 11 0

Val

python ./nnformer/run/run_training.py 3d_fullres nnFormerTrainerV2_PelvicTumour 11 0 -val