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@uw-loci

UW-Madison LOCI

Laboratory for Optical and Computational Instrumentation: the UW-Madison research lab of Kevin Eliceiri

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  1. curvelets curvelets Public

    Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)

    MATLAB 28 18

  2. loci-scripts loci-scripts Public

    Scripts and macros for LOCI scientific problems

    Shell

  3. visbio-imagej visbio-imagej Public

    ImageJ plugins for 3D visualization using the VisAD toolkit

    Java 1

  4. misc-plugins misc-plugins Public

    Miscellaneous ImageJ plugins

    Java 2 1

  5. search-image-sc search-image-sc Public

    Image.sc search service

    Python

Repositories

Showing 10 of 118 repositories
  • Flamingo_Control Public

    Controlling a Flamingo microscope from Python

    uw-loci/Flamingo_Control’s past year of commit activity
    Python 2 MIT 2 0 0 Updated Feb 10, 2026
  • EBEAM_dashboard Public

    EBEAM System GUI

    uw-loci/EBEAM_dashboard’s past year of commit activity
    Python 7 1 0 6 Updated Feb 10, 2026
  • tme-quant Public
    uw-loci/tme-quant’s past year of commit activity
    Python 1 0 15 1 Updated Feb 9, 2026
  • qupath-extension-qpsc Public

    Java based extension for QuPath allowing control of a microscope through MicroManager

    uw-loci/qupath-extension-qpsc’s past year of commit activity
    Java 0 0 0 0 Updated Feb 9, 2026
  • knob-box Public

    EBEAM Knob Box firmware

    uw-loci/knob-box’s past year of commit activity
    C++ 1 1 0 2 Updated Feb 9, 2026
  • cellcast Public

    A recast of cell segmentation models built on the Burn deep learning framework.

    uw-loci/cellcast’s past year of commit activity
    Rust 7 MIT 0 1 0 Updated Feb 9, 2026
  • EBEAM_webmonitor Public

    Website for remote monitoring of ebeam experiment

    uw-loci/EBEAM_webmonitor’s past year of commit activity
    JavaScript 1 0 0 0 Updated Feb 9, 2026
  • microscope_command_server Public

    Socket-based command server for remote microscope control and QuPath integration

    uw-loci/microscope_command_server’s past year of commit activity
    Python 0 0 0 0 Updated Feb 7, 2026
  • ppm_library Public

    Image processing library for polarized light microscopy (PPM) and general microscopy imaging

    uw-loci/ppm_library’s past year of commit activity
    Python 0 0 1 0 Updated Feb 6, 2026
  • microscope_control Public

    Hardware control library for microscopes via Pycromanager (Micro-Manager)

    uw-loci/microscope_control’s past year of commit activity
    Python 0 0 0 0 Updated Feb 6, 2026
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