StarDist - Object Detection with Star-convex Shapes
-
Updated
Feb 14, 2026 - Python
#
nuclei-segmentation
Here are 24 public repositories matching this topic...
[IMAVIS] Official implementation of "ASF-YOLO: A Novel YOLO Model with Attentional Scale Sequence Fusion for Cell Instance Segmentation".
deep-neural-networks yolo medical-image-computing medical-image-processing cell-segmentation nucleus-detection computer-vision-algorithms instance-segmentation deep-learning-framework cell-detection medical-image-analysis data-science-bowl-2018 medical-image-segmentation nuclei-segmentation lesion-segmentation hematoxylin-eosin-staining breast-cancer-segmentation detection-segmentation-algorithm histopathology-image-analysis breast-cancer-cell
-
Updated
Dec 16, 2025 - Python
Encoder-Decoder Cell and Nuclei segmentation models
ai ml pytorch microscopy cell-segmentation digital-pathology panoptic-segmentation nuclei-segmentation tissue-segmentation cellpose timm stardist hovernet omnipose
-
Updated
Nov 14, 2025 - Python
Segment Anything for Histopathology
-
Updated
Apr 7, 2026 - Python
StarDist plugin for napari
-
Updated
Aug 24, 2024 - Python
MICCAI2023 - TransNuSeg: A Lightweight Multi-Task Transformer for Nuclei Segmentation
medical-image-segmentation nuclei-segmentation swin-transformer miccai2023 shared-attention-heads lightweight-multi-task-framework
-
Updated
Feb 5, 2024 - Python
NuHTC: A Hybrid Task Cascade for Nuclei Instance Segmentation and Classification
-
Updated
Mar 23, 2026 - Python
Feature extraction from GEOJson nuclei and tissue segmentation maps
graph-algorithms feature-extraction spatial-data-analysis morphological-analysis digital-pathology clustering-methods roi-selection nuclei-segmentation regionalization tissue-segmentation immune-infiltration whole-slide-image whole-slide-annotation
-
Updated
Jun 23, 2025 - Python
Automated batch processing of cell and tissue microscopy image data in Napari
batch-processing cell-segmentation cell-tracking napari-plugin nuclei-segmentation microscopy-data cellpose microscopy-image-analysis sam2 microscopy-image-processing
-
Updated
Apr 15, 2026 - Python
H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net
deep-learning whole-slide-imaging computational-pathology biomedical-image-analysis pathology-image nuclei-segmentation pathomics hover-net he-staining
-
Updated
Jul 30, 2024 - Python
Toolbox for histopathology image analysis
-
Updated
Aug 18, 2025 - Python
Implementation of U_Net architecture for medical image segmentation purpose.
medical-imaging unet segementation unet-image-segmentation unet-keras unet-tensorflow nuclei-segmentation
-
Updated
Jun 13, 2020 - Python
MICCAI-COMPAY-2021: An automatic nuclei image segmentation based on multi-scale split-attention u-net
-
Updated
Sep 12, 2022 - Python
Napari plugin for spatial RNA quantification
-
Updated
Apr 15, 2026 - Python
Official implementation of "PanopMamba: Vision State Space Modeling for Nuclei Panoptic Segmentation".
nucleus-segmentation computational-pathology medical-image-segmentation panoptic-segmentation biomedical-image-analysis pixel-decoder nuclei-segmentation boundary-segmentation biomedical-image-segmentation imbalanced-classes feature-fusion-network monusac-challenge panoptic-quality small-object-segmentation histopathology-image-analysis histological-image-segmentation microscopy-image-analysis mamba-state-space-models mamba-image-segmentation mamba-vision
-
Updated
Jan 27, 2026 - Python
CompSegNet: An enhanced U-shaped architecture for nuclei segmentation in H&E histopathology images
deep-learning transformers convolutional-neural-networks computational-pathology gcnet nuclei-segmentation receptive-fields global-context-modeling moblilenetv2 residual-bottleneck-transformer
-
Updated
Aug 12, 2024 - Python
A Napari plugin for automated cell nuclei detection, cell proliferation & population growth analysis, and single-cell tracking in brightfield and fluorescence microscopy images
yolo nuclei cell-segmentation cell-detection cell-tracking nuclei-detection nuclei-segmentation timelapse-image microscopy-image-analysis cell-proliferation-assays
-
Updated
Apr 1, 2026 - Python
compact version of the official hovernet impl in pytorch
-
Updated
May 21, 2023 - Python
VitaminPScope – VitaminPScope — AI Digital Pathology Viewer for Whole-Slide Images (WSI)
-
Updated
Apr 10, 2026 - Python
pytorch implement of AD-GAN
-
Updated
Jan 22, 2023 - Python
Improve this page
Add a description, image, and links to the nuclei-segmentation topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the nuclei-segmentation topic, visit your repo's landing page and select "manage topics."