Plugin split-vep runs into segmentation fault when long form --all-fields is used instead of short form -A.
# version
$ bcftools --version
bcftools 1.21
Using htslib 1.21
Copyright (C) 2024 Genome Research Ltd.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
# using --all-fields
$ bcftools +split-vep test.vcf --format '%CHROM\t%POS\t%REF\t%ALT\t%CSQ\n' --all-fields tab > /dev/null
Segmentation fault
# using -A
$ bcftools +split-vep test.vcf --format '%CHROM\t%POS\t%REF\t%ALT\t%CSQ\n' -A tab > /dev/null
$
Plugin split-vep runs into segmentation fault when long form
--all-fieldsis used instead of short form-A.