Skip to content

Releases: pirovc/multitax

MultiTax v1.5.2

15 Apr 15:43
4f27f59

Choose a tag to compare

Add translation/conversion support for GTDB R232

MultiTax v1.5.1

01 Apr 13:59
aa96eda

Choose a tag to compare

Hotfix for download link of gtdb conversion tables

MultiTax v1.5.0

30 Mar 16:19

Choose a tag to compare

  • versioned taxonomies with: GtdbTx(version="95")
  • created custom files for each GTDB version stored in the repo data/gtdb/, also used for translation NCBI <> GTDB
  • GTDB conversion between versions, based on representative genomes
  • convert CustomTx to any Tx: NcbiTx.from_customtx(tax_custom)
  • LCA integrated: OttTx().lca(["node1", "node2"]) with pylca

MultiTax v1.4.0

04 Feb 19:31
ca2cb6b

Choose a tag to compare

  • Modernize infrastructure (pyproject.toml)
  • Change NCBI taxonomy ranks to use domain instead of superkingdom
  • Change GTDB base url for a worldwide faster link
  • Fix Silva download link
  • Update Greengenes taxonomy to Greengenes2: https://ftp.microbio.me/greengenes_release/current/
  • Update OTT to 3.7.3

MultiTax v1.3.2

09 Jul 17:35

Choose a tag to compare

Fix #19
Thanks @ktmbiome for encouraging ;)

MultiTax v1.3.1

26 Apr 09:36
396e19c

Choose a tag to compare

MultiTax v1.3.0

30 Mar 15:36
3d22282

Choose a tag to compare

  • First translation implemented between NCBI and GTDB
  • 3 new functions to change taxonomies: add(), remove() and prune() (in addition to the existing filter())
  • OTT updated to version 3.4
  • bug fixes and improvements

MultiTax v1.2.1

01 Nov 08:33
649024a

Choose a tag to compare

Fix bug parsing multiple custom files #11

MultiTax v1.2.0

05 Sep 09:37

Choose a tag to compare

MultiTax v1.1.1

19 Apr 06:56

Choose a tag to compare

  • Fix GTDB url #4