Releases: pirovc/multitax
Releases · pirovc/multitax
MultiTax v1.5.2
MultiTax v1.5.1
Hotfix for download link of gtdb conversion tables
MultiTax v1.5.0
- versioned taxonomies with:
GtdbTx(version="95") - created custom files for each GTDB version stored in the repo
data/gtdb/, also used for translation NCBI <> GTDB - GTDB conversion between versions, based on representative genomes
- convert CustomTx to any Tx:
NcbiTx.from_customtx(tax_custom) - LCA integrated:
OttTx().lca(["node1", "node2"])with pylca
MultiTax v1.4.0
- Modernize infrastructure (
pyproject.toml) - Change NCBI taxonomy ranks to use
domaininstead ofsuperkingdom - Change GTDB base url for a worldwide faster link
- Fix Silva download link
- Update Greengenes taxonomy to Greengenes2: https://ftp.microbio.me/greengenes_release/current/
- Update OTT to 3.7.3
MultiTax v1.3.2
MultiTax v1.3.1
Fix #17
MultiTax v1.3.0
- First translation implemented between NCBI and GTDB
- 3 new functions to change taxonomies: add(), remove() and prune() (in addition to the existing filter())
- OTT updated to version 3.4
- bug fixes and improvements
MultiTax v1.2.1
Fix bug parsing multiple custom files #11
MultiTax v1.2.0
See #10
MultiTax v1.1.1
- Fix GTDB url #4