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@pearsonlab Pearson Lab at Duke University

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    68 repositories

    • ouroboros

      Public
      Cleaned ouroboros code, transfered to Pearson lab. (Should) (Mostly) work
      Python
      •1•0•0•2•Updated Jun 7, 2026Jun 7, 2026

    • pearsonlab.github.io

      Public
      Lab webpage
      Python
      •16•16•0•0•Updated May 25, 2026May 25, 2026

    • trajectory-decoding

      Public
      Sequence autoencoder (Dai & Le 2015) with Mamba SSM for trajectory/motion classification
      Python
      •0•0•0•0•Updated May 14, 2026May 14, 2026

    • vocal-error-network

      Public
      The code for the paper "Correctness is its own reward: bootstrapping error signals in self-guided reinforcement learning"
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 2, 2026Apr 2, 2026

    • improv-ava

      Public
      Flexible pipelines for adaptive, real-time shaping and steering of vocal learning
      Python
      •0•1•0•0•Updated Jan 26, 2026Jan 26, 2026

    • HVC_DA

      Public
      Python
      •0•0•0•0•Updated Dec 8, 2025Dec 8, 2025

    • efficientcodingcolor

      Public
      Color project (David St-Amand)
      Jupyter Notebook
      •
      MIT License
      •3•0•0•0•Updated Oct 27, 2025Oct 27, 2025

    • efficientcoding

      Public
      Python
      •
      MIT License
      •3•3•0•0•Updated May 9, 2024May 9, 2024

    • autoencoded-vocal-analysis

      Public
      Modeling animal vocalizations with variational autoencoders
      Python
      •
      MIT License
      •10•27•0•0•Updated Mar 2, 2024Mar 2, 2024

    • Bubblewrap

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •4•6•0•3•Updated Aug 8, 2023Aug 8, 2023

    • proSVD

      Public
      Python
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Aug 8, 2023Aug 8, 2023

    • syrinx

      Public
      Code for modeling song generation in the avian vocal periphery
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Aug 4, 2023Aug 4, 2023

    • POISE-VAE-JAX

      Public
      Experimental implementation of POISE-VAE in JAX
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jan 18, 2023Jan 18, 2023

    • VAE-GAM-

      Public
      Code for VAE-GAM fMRI model
      Python
      •0•0•0•0•Updated Mar 28, 2022Mar 28, 2022

    • anti-bayes

      Public
      Modeling of non-Bayesian psychometric behavior in a jump detection task
      Stan
      •0•0•0•0•Updated Jan 2, 2022Jan 2, 2022

    • finch-vae

      Public
      Joint-encoding VAE for zebra finch song and neural data
      Python
      •
      MIT License
      •0•2•0•0•Updated Oct 20, 2021Oct 20, 2021

    • legal

      Public
      Analysis models for Duke Legal Decision Making Survey
      rsurveybayesian
      rsurveybayesianstan
      R
      •5•2•0•0•Updated Aug 24, 2021Aug 24, 2021

    • pupil

      Public
      Matlab and Python code for pupillometry studies.
      Python
      •4•14•0•0•Updated May 27, 2021May 27, 2021

    • CaImAn

      Public
      Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result v…
      Python
      •
      GNU General Public License v2.0
      •399•0•0•0•Updated Oct 14, 2020Oct 14, 2020

    • BinaryStim

      Public
      Repo for code and figures associated with the paper 'Online Neural Connectivity Estimation with Noisy Group Testing'
      Python
      •1•3•0•0•Updated Oct 12, 2020Oct 12, 2020

    • stoblodetnet

      Public
      Julia
      •0•0•0•1•Updated Aug 18, 2020Aug 18, 2020

    • tf_gbds

      Public
      TensorFlow implementation of goal-based dynamical system model
      Python
      •
      MIT License
      •1•0•0•0•Updated Mar 4, 2020Mar 4, 2020

    • sfn-2019

      Public
      John's talk at the 2019 Society for Neuroscience meeting
      CSS
      •0•0•0•0•Updated Oct 23, 2019Oct 23, 2019

    • penaltyshot_task

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 19, 2019Sep 19, 2019

    • SpikingNeuralNets.jl

      Public
      A Julia library for simulating arbitray populations of spiking neurons.
      Julia
      •
      MIT License
      •0•0•0•0•Updated Aug 6, 2019Aug 6, 2019

    • modeling-differential-games

      Public
      John's talk: "Modeling real behavior in two-person differential games"
      JavaScript
      •0•0•0•0•Updated Apr 16, 2019Apr 16, 2019

    • dibs-zebrafish-incubator

      Public
      CSS
      •0•0•0•0•Updated Oct 25, 2018Oct 25, 2018

    • artificial-agents-social-decisions

      Public
      John's talk at Duke's Basic Science Day 2018
      CSS
      •0•0•0•0•Updated Oct 18, 2018Oct 18, 2018

    • imagemp

      Public
      Concurrent image acquisition and processing (producer-consumers model), with maximized efficiency and minimized chance of missing a frame
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 23, 2018Sep 23, 2018

    • concrete

      Public
      continuous relaxation of HMM
      Python
      •0•0•0•0•Updated Sep 10, 2018Sep 10, 2018
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