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    77 repositories

    • hatch-protobuf

      Public
      Hatch plugin for generating Python files from Protocol Buffers .proto files
      Python
      •
      Other
      •6•14•1•0•Updated Apr 21, 2026Apr 21, 2026

    • pomoxis

      Public
      Analysis components from Oxford Nanopore Research
      Python
      •
      Other
      •22•97•10•1•Updated Apr 9, 2026Apr 9, 2026

    • medaka

      Public
      Sequence correction provided by ONT Research
      nanoporemedaka
      nanoporemedaka
      Python
      •
      Other
      •89•506•31•3•Updated Apr 8, 2026Apr 8, 2026

    • pod5-file-format

      Public
      Pod5: a high performance file format for nanopore reads.
      nanoporefile-formatapache-arrow
      nanoporefile-formatapache-arrow
      C++
      •
      Other
      •37•174•50•2•Updated Mar 31, 2026Mar 31, 2026

    • ont-output-specifications

      Public
      Specifications for output files from MinKNOW, dorado and others
      Python
      •0•6•0•0•Updated Mar 18, 2026Mar 18, 2026

    • bonito

      Public
      A PyTorch Basecaller for Oxford Nanopore Reads
      nanoporepytorchbasecalling
      nanoporepytorchbasecalling
      Python
      •
      Other
      •136•430•4•2•Updated Feb 20, 2026Feb 20, 2026

    • dorado

      Public
      Oxford Nanopore's Basecaller
      nanoporegenomicslibtorch
      nanoporegenomicslibtorchbasecalling
      C++
      •
      Other
      •118•820•87•3•Updated Feb 19, 2026Feb 19, 2026

    • ont-minimap2

      Public
      Cross platform builds for minimap2
      CMake
      •3•8•0•0•Updated Feb 11, 2026Feb 11, 2026

    • modkit

      Public
      A bioinformatics tool for working with modified bases
      nanoporemethylationmodified-bases
      nanoporemethylationmodified-bases
      Rust
      •
      Other
      •27•262•282•4•Updated Jan 19, 2026Jan 19, 2026

    • pyspoa

      Public
      Python bindings to spoa
      nanoporealignmentpoa
      nanoporealignmentpoamultiple-sequence-alignment
      Python
      •
      Other
      •4•22•3•0•Updated Dec 3, 2025Dec 3, 2025

    • pomfret

      Public
      C
      •2•27•2•0•Updated Nov 14, 2025Nov 14, 2025

    • minknow_api

      Public
      Protobuf and gRPC specifications for the MinKNOW API
      Python
      •
      Other
      •16•69•40•2•Updated Oct 29, 2025Oct 29, 2025

    • fast-ctc-decode

      Public
      Blitzing Fast CTC Beam Search Decoder
      beam-searchviterbictc-decode
      beam-searchviterbictc-decode
      Rust
      •
      MIT License
      •29•186•3•1•Updated Oct 27, 2025Oct 27, 2025

    • dorado-docs

      Public
      Dorado Documentation
      Python
      •
      Other
      •1•7•0•0•Updated Aug 4, 2025Aug 4, 2025

    • awesome-nanopore

      Public
      A curated list of awesome nanopore analysis tools.
      MIT License
      •57•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • rerio

      Public
      Research release basecalling models and configurations
      nanoporebasecalling
      nanoporebasecalling
      Python
      •
      Other
      •11•117•4•1•Updated May 21, 2025May 21, 2025

    • ont-spectre

      Public
      Python
      •
      Other
      •4•13•7•1•Updated May 2, 2025May 2, 2025

    • vbz_compression

      Public
      VBZ compression plugin for nanopore signal data
      compressionnanoporehdf5
      compressionnanoporehdf5
      C++
      •
      Mozilla Public License 2.0
      •13•43•21•1•Updated Apr 7, 2025Apr 7, 2025

    • homebrew-tap

      Public
      Homebrew casks for applications from Oxford Nanopore Technologies PLC and Metrichor Ltd.
      homebrewnanoporecasks
      homebrewnanoporecasksepi2me
      Ruby
      •0•7•0•0•Updated Dec 24, 2024Dec 24, 2024

    • read_until_api

      Public
      Read Until client library for Nanopore Sequencing
      Python
      •
      Other
      •12•108•0•0•Updated Sep 25, 2024Sep 25, 2024

    • remora

      Public
      Methylation/modified base calling separated from basecalling.
      nanoporemethylationbasecalling
      nanoporemethylationbasecalling
      Python
      •
      Other
      •27•186•16•1•Updated Sep 17, 2024Sep 17, 2024

    • sqlpad

      Public
      Web-based SQL editor run in your own private cloud. Supports MySQL, Postgres, SQL Server, Vertica, Crate, ClickHouse, Trino, Presto, SAP HANA, Cassandra, Snowfl…
      JavaScript
      •
      MIT License
      •814•0•0•0•Updated May 14, 2024May 14, 2024

    • DTR-phage-pipeline

      Public
      Python
      •
      Mozilla Public License 2.0
      •6•17•2•1•Updated Mar 11, 2024Mar 11, 2024

    • ont_fast5_api

      Public
      Oxford Nanopore Technologies fast5 API software
      Python
      •
      Other
      •30•155•13•1•Updated Feb 27, 2024Feb 27, 2024

    • pipeline-umi-amplicon

      Public
      Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
      Python
      •
      Other
      •14•35•18•3•Updated Feb 27, 2024Feb 27, 2024

    • linux4.9-minit

      Public
      ONT fork of Linux for NVIDIA Tegra based devices
      C
      •
      Other
      •1•0•0•0•Updated Jun 30, 2023Jun 30, 2023

    • kmer_models

      Public
      Predictive kmer models for development use
      Mozilla Public License 2.0
      •20•63•0•0•Updated Jun 6, 2023Jun 6, 2023

    • duplex-tools

      Public
      Splitting of sequence reads by internal adapter sequence search
      Python
      •
      Other
      •8•51•21•0•Updated May 30, 2023May 30, 2023

    • megalodon

      Public
      Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the informatio…
      epigeneticsvariant-callingbasecalling
      epigeneticsvariant-callingbasecallingguppy
      Python
      •
      Other
      •27•204•47•0•Updated May 4, 2023May 4, 2023

    • tombo

      Public
      Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
      epigenetics
      epigenetics
      Python
      •
      Other
      •54•234•132•2•Updated May 4, 2023May 4, 2023
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