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    10 repositories

    • BarcodeMAE

      Public
      A masked autoencoder for enhancing DNA foundation models by addressing masking inefficiencies.
      Python
      •
      MIT License
      •2•3•1•0•Updated Apr 24, 2026Apr 24, 2026

    • clibd

      Public
      A multimodal model bridging vision and genomics for biodiversity monitoring at scale.
      Python
      •
      MIT License
      •4•18•0•1•Updated Apr 5, 2026Apr 5, 2026

    • BarcodeBERT

      Public
      A transformer model for DNA barcode representation learning and taxonomic classification.
      HTML
      •
      MIT License
      •6•16•4•2•Updated Mar 20, 2026Mar 20, 2026

    • dataset

      Public
      PyTorch torchvision-style datasets for BIOSCAN-1M and BIOSCAN-5M.
      Python
      •
      MIT License
      •1•8•1•1•Updated Mar 16, 2026Mar 16, 2026

    • BIOSCAN-5M

      Public
      A multimodal dataset of 5M insect specimens for biodiversity research.
      Python
      •
      Other
      •1•20•15•0•Updated Feb 25, 2026Feb 25, 2026

    • bioscan-ml-catalog

      Public
      A catalog aggregating BIOSCAN-ML datasets, models, and code from HuggingFace and GitHub.
      TypeScript
      •0•1•0•0•Updated Feb 19, 2026Feb 19, 2026

    • bioscan-croptool

      Public
      A tool to automatically detect and crop insect regions from images using deep learning.
      Python
      •0•1•0•1•Updated Feb 18, 2026Feb 18, 2026

    • zs-ssl-clustering

      Public
      A zero-shot clustering toolkit for evaluating SSL embeddings on BIOSCAN-5M data.
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 15, 2025Aug 15, 2025

    • BIOSCAN-1M

      Public
      A dataset of 1M insect specimens with DNA barcodes, taxonomy, and images.
      Python
      •
      MIT License
      •3•33•0•0•Updated Apr 30, 2025Apr 30, 2025

    • BarcodeMamba

      Public
      A performant and efficient foundation model for DNA barcodes in biodiversity analysis.
      Python
      •
      MIT License
      •1•3•2•0•Updated Dec 14, 2024Dec 14, 2024
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