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Pepsickle / torch libomp clash crashes vaxrank on macOS — robust fix needed

Status: Open.

#266 In openvax/vaxrank;

· iskandr opened on May 2, 2026

Surface mhcflurry pres_score / pres_perc / proc_score from LENS (complement to pepsickle)

Status: Open.

#265 In openvax/vaxrank;

· iskandr opened on May 1, 2026

HLA LOH + B2M / TAP / antigen-presentation pathway integrity from LENS

Status: Open.

#264 In openvax/vaxrank;

· iskandr opened on May 1, 2026

Surface non-SNV antigens (SPLICE / FUSION / CTA-SELF / ERV) from LENS reports

Status: Open.

#263 In openvax/vaxrank;

· iskandr opened on May 1, 2026

Reports surface only the canonical predictor's IC50 — multi-predictor LENS data lost in HTML/PDF/CSV

Status: Open.

#261 In openvax/vaxrank;

· iskandr opened on Apr 30, 2026

write_neoepitope_report raises on duplicate (peptide, allele) rows from LENS

Status: Open.

#260 In openvax/vaxrank;

· iskandr opened on Apr 30, 2026

LENS variant_coords parser: handle real 'chr:pos' (2-part) form + NaN + non-SNV rows

Status: Open.

#259 In openvax/vaxrank;

· iskandr opened on Apr 30, 2026

Oncovirus antigen database for on-target ligand classification (#249 follow-up)

Status: Open.

#258 In openvax/vaxrank;

· iskandr opened on Apr 30, 2026

CTA antigen database for on-target ligand classification (#249 follow-up)

Status: Open.

#257 In openvax/vaxrank;

· iskandr opened on Apr 30, 2026

Safety scoring of vaccine antigen windows: minimize self-peptide presentation + tissue-aware autoimmunity risk

Status: Open.

#254 In openvax/vaxrank;

· iskandr opened on Apr 30, 2026

Boundary-processing-aware SLP windowing

Status: Open.

#249 In openvax/vaxrank;

· iskandr opened on Apr 28, 2026

Add more predictions to EpitopePrediction

Status: Open.

#201 In openvax/vaxrank;

· iskandr opened on May 10, 2024