RNA-seq Workflow

This project aims to build a simple, reproducible RNA-seq processing workflow.

Task

Process raw RNA-seq sequencing reads into quality-controlled, analysis-ready gene-level count data, with summary quality-control information produced alongside the results.

Constraints

• The workflow should be reproducible.
• It should support typical RNA-seq input data.
• It should produce gene-level count data suitable for downstream analysis.
• Quality-control information should be generated and summarized.
• The workflow should remain reasonably simple and suitable for local execution.
• Differential expression analysis is outside the scope of the initial version.