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#8241 - Autotests: Get rid of flacky tests - #9322
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* Initial plan * update node version references Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com>
…ta (#9000) * Initial plan * Replace regex trimRight with trimEnd Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com>
) * Initial plan * chore: update react-router to 7.13.0 Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com>
…onents - Incomplete Fix Follow-Up (#9006) * Initial plan * chore: upgrade next/react for example-ssr Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com>
… applied (#8992) * Initial plan * fix: always show monomer group titles in RNA accordion Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * limit natural analog titles to relevant monomer groups Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * fixes --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> Co-authored-by: Alexey Girin <alexey_girin@epam.com>
… updates (#9015) * Initial plan * Update qs and body-parser overrides Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * Update body-parser via parent dependency Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com>
…ut overrides (#9019) * Initial plan * chore: override js-yaml to patched versions Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * chore: bump js-yaml patch versions Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * chore: remove js-yaml overrides and update lock Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com>
…8979) * Initial plan * Align S-Group subtype combobox width with other selects Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * fix: show selected empty subtype option Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * fixes * - fixed non specified value * - fixed unit tests * fixes --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> Co-authored-by: Alexey Girin <alexey_girin@epam.com> Co-authored-by: Roman Rodionov <roman_rodionov@epam.com>
…ynamic method call (#9001) * Potential fix for code scanning alert no. 22: Unvalidated dynamic method call Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com> * Fix unvalidated dynamic method call in parseSGroup.js (#9002) * Initial plan * Fix unvalidated dynamic method call in parseSGroup.js Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * Optimize security fix by moving constants outside function scope Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> --------- Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com> Co-authored-by: Copilot <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com>
* Initial plan * chore: fix package.json trailing comma Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * chore: remove postcss override Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com>
…omolecules mode (#8989) * fix dissapearing molecule from expanded monomer * fixed build * create fragment after removing s group * fixed build * removed redundant * added comment
* add cases * add cases and files * update code and screenshoots * remove step about screenshoot * changes after review * some changes for wariningMessageDialog * add changes * add changes after review
* First * second
* Initial plan * chore: plan phosphate category fix Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * fix: hide phosphate natural analogue groups Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * fixes * f2 * f3 * revert: restore RNA phosphate grouping Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * chore: revert package-lock.json Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * fixes * f2 --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> Co-authored-by: Alexey Girin <alexey_girin@epam.com>
…8973) Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> Co-authored-by: Roman Rodionov <roman_rodionov@epam.com>
* Delete documentation/images/S-Group-Properties-3.6.png * Add files via upload * Update help.md
* Initial plan
* Fix ambiguous JSX whitespace in RnaPresetTabs.tsx
Co-authored-by: oguzhanduran <86467364+oguzhanduran@users.noreply.github.com>
* Use explicit JSX space expression {' '} as per lint rule
Co-authored-by: oguzhanduran <86467364+oguzhanduran@users.noreply.github.com>
* Format JSX space expression on single line as per image
Co-authored-by: oguzhanduran <86467364+oguzhanduran@users.noreply.github.com>
* Use regular space instead of {' '} JSX expression
Co-authored-by: oguzhanduran <86467364+oguzhanduran@users.noreply.github.com>
---------
Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: oguzhanduran <86467364+oguzhanduran@users.noreply.github.com>
…ithin the loop body (#9237) * Refactor loop structures to use while instead of for for improved readability in utils.js and v3000.js * Refactor spacebarsplit function for improved readability and maintainability
* 9160/refactor:remove unused assignments * 9160/refactor:remove unused assignments * 9160/refactor:try to pass test in github * remove ubused assignments * fix:remove unnnessacary changes from structeditor * fix:revert * remove unused assigments * refactor:use lodash for form and structeditor
* Initial plan * fix: reject empty monomer group template names Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * fix: keep preset template updates while validating names Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * test: cover whitespace-only preset names Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * fix: clarify empty preset name error text Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com>
… should not be used for promise rejection (#9277) * 9276: fix promise rejection for literal usage * normalizeError utility added * added normalizeError utility into all necessary files
…9095) * Initial plan * Add stereoLabel support to CoreAtom and AtomRenderer for macromolecules mode Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * Fix magic number in positionStereoLabel method Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * fixed size of stereolabel * fixed displaying abs stereoflags * fixed moving stereolabel after moving second bonds atom --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> Co-authored-by: Aleksei Proskurnov <proskurn@gmail.com>
* Fix empty collection access in sequence tests and sgroup action * Fix: Always initialize `attachmentPoints` as an empty array, disregarding `attrs.attachmentPoints`.
* refactor analyse dialog to remove unused class methods * refactor: move analyseItems constant outside of Analyse component to prevent re-declaration
…cessor (#9213) * Fix EditorHistory constructor return by using static accessor * fix: Disable `no-use-before-define` ESLint rule for the `_instance` property. * style: format EditorHistory.update arguments for improved readability. * refactor: improve type safety of EditorHistory singleton by adding an instance type guard.
Removed developers and QA groups from auto assign configuration.
…ions (#9296) * Initial plan * refactor: move async monomers library init out of CoreEditor constructor Co-authored-by: beyzaevcen <95762073+beyzaevcen@users.noreply.github.com> * #9260 - undo the changes on package-lock --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: beyzaevcen <95762073+beyzaevcen@users.noreply.github.com>
* Initial plan * Add rotation and flip functionality for monomers in Macromolecules mode Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * Add interactive rotation handle functionality with 15° snapping Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> * Address code review feedback: extract constants, improve comments Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: AlexeyGirin <26869421+AlexeyGirin@users.noreply.github.com> Co-authored-by: Roman Rodionov <roman_rodionov@epam.com>
Zhirnoff
approved these changes
Feb 28, 2026
…totests-git-rid-of-flacky-tests
AlexeyGirin
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