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Correct the stereo-bonds of sugars #8599

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Feature
#8606
#8605
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Correct the stereo-bonds of sugars#8599
Feature
#8606
#8605
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ljubica-milovic
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ContentBucket: Library content related issues
Milestone
Ketcher 3.10.0-rc.4

Description

@ljubica-milovic
ljubica-milovic
opened on Nov 20, 2025

Background

Because of incorrect stereochemistry on C3 of ribose one bond in ribose and two nucleotides must change orientation.

Structure

Type Symbol Bond between atoms Change to stereo bond type
Sugar R 1 & 7 6
Nucleotide 3Puro 3 & 21 6
Nucleotide 5Ade 3 & 19 6

Activity

  1. ljubica-milovic
    added the
    Feature
    issue type on Nov 20, 2025
  2. ljubica-milovic
    added
    ContentBucket: Library content related issues
    on Nov 20, 2025
  3. ljubica-milovic
    added this to the Ketcher 3.10.0-rc.3 milestone on Nov 20, 2025
  4. ljubica-milovic
    self-assigned this
    on Nov 20, 2025
  5. rrodionov91
    modified the milestones: Ketcher 3.10.0-rc.3, Ketcher 3.10.0-rc.4 on Nov 20, 2025
  6. rrodionov91
    added a commit that references this issue on Nov 20, 2025

    #8599 - Correct the stereo-bonds of sugars

    a8c55ca
  7. rrodionov91
    linked a pull request that will close this issue#8599 - Correct the stereo-bonds of sugars #8605on Nov 20, 2025
  8. rrodionov91
    added 2 commits that reference this issue on Nov 20, 2025

    #8599 - Correct the stereo-bonds of sugars (#8605)

    545a77f

    #8599 - Correct the stereo-bonds of sugars (#8605)

    b841e7b
  9. rrodionov91
    linked a pull request that will close this issueBackmerge: #8599 - Correct the stereo-bonds of sugars #8606on Nov 20, 2025
  10. rrodionov91
    added 2 commits that reference this issue on Nov 20, 2025

    #8599 - Correct the stereo-bonds of sugars (#8605)

    15a2ebc

    Backmerge: #8599 - Correct the stereo-bonds of sugars (#8606)

    8001872
  11. rrodionov91
    closed this as completedin #8606on Nov 20, 2025
  12. AlexeyGirin
    added a commit that references this issue on Nov 20, 2025

    Backmerge: #8599 - Correct the stereo-bonds of sugars (#8606)

    6bc9640

  13. AlexeyGirin commented on Nov 21, 2025

    @AlexeyGirin
    AlexeyGirin
    on Nov 21, 2025
    Collaborator
    Image Image Image

  14. AlexeyGirin commented on Nov 21, 2025

    @AlexeyGirin
    AlexeyGirin
    on Nov 21, 2025
    Collaborator

    Preliminary tested.

    • Ketcher Version 3.10.0-rc.2 Build at 2025-11-13; 05:10:51
    • Indigo Version 1.38.0-dev.3.28-g65aed093-wasm32-wasm-clang-19.0.0
    • Chrome Version 142.0.7444.163 (Official Build) (64-bit)
    • Win10

  15. AlexeyGirin commented on Nov 21, 2025

    @AlexeyGirin
    AlexeyGirin
    on Nov 21, 2025
    Collaborator

    Verified.
    Image
    Image
    Image

    • Ketcher Version 3.10.0-rc.4 Build at 2025-11-21; 12:18:32
    • Indigo Version 1.38.0-rc.3.0-g32f980d3b-wasm32-wasm-clang-19.0.0
    • Chrome Version 142.0.7444.176 (Official Build) (64-bit)
    • Win10
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