Computational Biologist | Bioinformatics Specialist

PhD Candidate in Biology
R&D Bioinformatics Researcher – NGS Data Analysis at Intergen
Based in Türkiye
Contact: efedalli96@gmail.com

ORCID: 0000-0003-4380-2663

I work at the intersection of biology, genomics, and computation, focusing on
reproducible bioinformatics pipelines, comparative genomics, and
NGS-based clinical and research applications.

• NGS bioinformatics pipelines

  • WGS / WES / RNA-seq / smallRNA
  • Variant calling (SNV, CNV, SV)

• Clinical & translational bioinformatics

  • Rare disease genomics
  • RNA aberrant expression & splicing (MAE / FRASER / DROP)
  • Fusion detection & functional annotation

• Comparative genomics & molecular phylogenetics

  • Orthology and paralogy assignment from phylogeny and synteny

• Antimicrobial & functional genomics

  • Small ORF discovery (smORFs)
  • Antimicrobial peptide (AMP) prediction & in silico characterization
  • Structure modeling & peptide–protein docking

• Microbial genomics & systematics

  • Novel species discovery (ANI / AAI / dDDH / phylogenomics)
  • Comparative genomics & pangenome analysis

• Conda / Mamba environments
• HPC & Slurm-based workflows
• Reproducible & scalable pipeline design

• Multi-omics integration
• Comparative genomics & molecular phylogenetics of vertebrate gene families
  • Gene family inventories across multiple genome assemblies
  • Ohnologue retention and loss after whole-genome duplication
  • Orthology inference from phylogeny, synteny and tests of selective constraint