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Allow k > 32 in khmer #60
Description
There have been a number of requests to enable k > 32 in khmer code. This should be relatively straightforward (@fishjord has a cyclic hash implementation in Java that he sent around) but has not so far been a priority. This is an issue so that we can track such requests in the future and keep it somewhere on the list.
Note, we need to figure out how to deal with _revhash issues; there are a few places in the code where exact hashes are kept and converted from numbers back into strings. Not a blocker, just a detail issue.
Activity
mr-c commentedon Aug 1, 2013
@fishjord where is your java implementation mentioned above?
fishjord commentedon Aug 1, 2013
Most of the code is in this package:
https://github.com/fishjord/Xander-HMMgs/tree/master/src/edu/msu/cme/rdp/graph/hash
sjackman commentedon Dec 17, 2013
+1
mr-c commentedon Jan 15, 2015
See also https://twitter.com/beconstant/status/555750390323765248
alexjironkin commentedon Feb 6, 2015
+1
ctb commentedon Apr 28, 2015
Also see: https://twitter.com/ChristianHeimes/status/593007790861475840
ctb commentedon Feb 16, 2017
Now enabled by #1511 and friends.