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4,559 changes: 1,931 additions & 2,628 deletions package-lock.json

Large diffs are not rendered by default.

6 changes: 3 additions & 3 deletions package.json
Original file line number Diff line number Diff line change
Expand Up @@ -19,10 +19,10 @@
"check-format": "prettier -c . && uvx ruff check && uvx ruff format --check --exclude '*.ipynb'"
},
"devDependencies": {
"prettier": "^3.6.2",
"prettier-plugin-svelte": "^3.4.0"
"prettier": "^3.8.1",
"prettier-plugin-svelte": "^3.5.1"
},
"dependencies": {
"svelte": "^5.43.3"
"svelte": "^5.54.1"
}
}
6 changes: 3 additions & 3 deletions packages/backend/package.json
Original file line number Diff line number Diff line change
Expand Up @@ -9,9 +9,9 @@
},
"devDependencies": {
"@embedding-atlas/viewer": "*",
"anywidget": "^0.9.18",
"anywidget": "^0.9.21",
"streamlit-component-lib": "^2.0.0",
"svelte-check": "^4.3.1",
"vite": "^7.0.6"
"svelte-check": "^4.4.5",
"vite": "^8.0.1"
}
}
2 changes: 2 additions & 0 deletions packages/backend/tests/test_projection.py
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@@ -1,3 +1,5 @@
# Copyright (c) 2025 Apple Inc. Licensed under MIT License.

import numpy as np
import pandas as pd
from embedding_atlas.projection import compute_vector_projection
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16 changes: 3 additions & 13 deletions packages/backend/vite.config.anywidget.js
Original file line number Diff line number Diff line change
@@ -1,16 +1,7 @@
import { forceInlineWorker } from "@embedding-atlas/utils/vite";
import { defineConfig } from "vite";
import wasm from "vite-plugin-wasm";

function forceInlineWorker() {
return {
name: "force-inline-worker",
transform(code, id) {
// Hack: if we prefix the url with `"" +`, rollup will inline the worker.
return code.replace(/new Worker\(new URL\(/g, `new Worker("" + new URL(`);
},
};
}

// https://vitejs.dev/config/
export default defineConfig({
plugins: [forceInlineWorker()],
Expand All @@ -30,10 +21,9 @@ export default defineConfig({
},
copyPublicDir: false,
chunkSizeWarningLimit: 4096,
rollupOptions: {
rolldownOptions: {
output: {
inlineDynamicImports: true,
interop: "compat",
codeSplitting: false,
},
},
},
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27 changes: 15 additions & 12 deletions packages/component/package.json
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Expand Up @@ -37,24 +37,27 @@
},
"devDependencies": {
"@embedding-atlas/utils": "*",
"@sveltejs/vite-plugin-svelte": "^6.1.0",
"@tsconfig/svelte": "^5.0.4",
"@sveltejs/vite-plugin-svelte": "^7.0.0",
"@tsconfig/svelte": "^5.0.8",
"@types/d3-color": "^3.1.3",
"@uwdata/mosaic-core": ">=0.19.0",
"@uwdata/mosaic-sql": ">=0.19.0",
"@uwdata/vgplot": ">=0.19.0",
"@webgpu/types": "^0.1.64",
"@uwdata/mosaic-core": ">=0.21.1",
"@uwdata/mosaic-sql": ">=0.21.1",
"@uwdata/vgplot": ">=0.21.1",
"@webgpu/types": "^0.1.69",
"d3-color": "^3.1.0",
"fast-kde": "0.2.2",
"publint": "^0.3.12",
"publint": "^0.3.18",
"quickselect": "^3.0.0",
"simplify-js": "^1.2.4",
"stemmer": "^2.0.1",
"svelte": "^5.37.3",
"svelte-check": "^4.3.1",
"typescript": "^5.9.2",
"vite": "^7.0.6",
"svelte": "^5.54.1",
"svelte-check": "^4.4.5",
"typescript": "^5.9.3",
"vite": "^8.0.1",
"vite-plugin-dts": "^4.5.4",
"vite-plugin-wasm": "^3.5.0"
"vite-plugin-wasm": "^3.6.0"
},
"dependencies": {
"vitefu": "^1.1.2"
}
}
18 changes: 3 additions & 15 deletions packages/component/vite.config.js
Original file line number Diff line number Diff line change
@@ -1,28 +1,16 @@
import { fixAbsoluteImport } from "@embedding-atlas/utils/vite";
import { svelte } from "@sveltejs/vite-plugin-svelte";
import { defineConfig } from "vite";
import dts from "vite-plugin-dts";
import wasm from "vite-plugin-wasm";

function fixAbsoluteImport() {
// Fix a bug where vite outputs absolute paths for workers.
return {
name: "fix-absolute-import",
renderChunk(code) {
// new URL(/* @vite-ignore */ "/assets/worker_main-DWGFbKCZ.js"
// ->
// new URL("./assets/worker_main-DWGFbKCZ.js"
return code.replace(/new URL\((\/\*.*?\*\/ *)?"\//g, `new URL("./`);
},
};
}

// https://vitejs.dev/config/
export default defineConfig({
plugins: [svelte(), wasm(), dts({ rollupTypes: true }), fixAbsoluteImport()],
worker: {
plugins: () => [wasm()],
format: "es",
rollupOptions: {
rolldownOptions: {
output: {
entryFileNames: "[name].js",
},
Expand All @@ -37,7 +25,7 @@ export default defineConfig({
fileName: (_, entryName) => `${entryName}.js`,
formats: ["es"],
},
rollupOptions: {
rolldownOptions: {
external: ["@uwdata/mosaic-core", "@uwdata/mosaic-sql", "@embedding-atlas/utils"],
},
copyPublicDir: false,
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Original file line number Diff line number Diff line change
@@ -1,3 +1,5 @@
// Copyright (c) 2025 Apple Inc. Licensed under MIT License.

use std::io::{Read, Write};

use density_clustering::Array2D;
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Original file line number Diff line number Diff line change
@@ -1,3 +1,5 @@
// Copyright (c) 2025 Apple Inc. Licensed under MIT License.

mod array_io;
use density_clustering::*;
use serde::Serialize;
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2 changes: 1 addition & 1 deletion packages/density-clustering/package.json
Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,6 @@
"density_clustering_wasm/pkg/density_clustering_wasm_bg.wasm"
],
"devDependencies": {
"vitest": "^4.0.9"
"vitest": "^4.1.0"
}
}
1 change: 1 addition & 0 deletions packages/docs/.vitepress/theme/ExampleItem.vue
Original file line number Diff line number Diff line change
Expand Up @@ -50,6 +50,7 @@ const href = computed(
border-radius: 2px;
aspect-ratio: 16 / 9;
object-fit: cover;
margin: 0;
}

.example-item-title {
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2 changes: 1 addition & 1 deletion packages/docs/package.json
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,6 @@
"generate_cache": "uv run --project ../backend python generate_cache.py"
},
"devDependencies": {
"vitepress": "^1.6.3"
"vitepress": "2.0.0-alpha.17"
}
}
4 changes: 2 additions & 2 deletions packages/docs/tool.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,8 @@

The Python package contains a command-line utility for you to quickly explore large text datasets with metadata.

<img style="border-radius: 4px" class="light-only" src="./public/assets/embedding-atlas-light.png">
<img style="border-radius: 4px" class="dark-only" src="./public/assets/embedding-atlas-dark.png">
<img style="border-radius: 4px" class="light-only" src="/assets/embedding-atlas-light.png">
<img style="border-radius: 4px" class="dark-only" src="/assets/embedding-atlas-dark.png">

## Installation

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6 changes: 3 additions & 3 deletions packages/embedding-atlas/package.json
Original file line number Diff line number Diff line change
Expand Up @@ -79,9 +79,9 @@
"@embedding-atlas/viewer": "*",
"@embedding-atlas/umap-wasm": "*",
"tslib": "^2.8.1",
"typescript": "^5.9.2",
"vite": "^7.0.6",
"typescript": "^5.9.3",
"vite": "^8.0.1",
"vite-plugin-dts": "^4.5.4",
"svelte-check": "^4.3.1"
"svelte-check": "^4.4.5"
}
}
18 changes: 3 additions & 15 deletions packages/embedding-atlas/vite.config.js
Original file line number Diff line number Diff line change
@@ -1,19 +1,7 @@
import { fixAbsoluteImport } from "@embedding-atlas/utils/vite";
import { defineConfig } from "vite";
import dts from "vite-plugin-dts";

function fixAbsoluteImport() {
// Fix a bug where vite outputs absolute paths for workers.
return {
name: "fix-absolute-import",
renderChunk(code) {
// new URL(/* @vite-ignore */ "/assets/worker_main-DWGFbKCZ.js"
// ->
// new URL("./assets/worker_main-DWGFbKCZ.js"
return code.replace(/new URL\((\/\*.*?\*\/ *)?"\//g, `new URL("./`);
},
};
}

// https://vitejs.dev/config/
export default defineConfig({
plugins: [
Expand All @@ -30,7 +18,7 @@ export default defineConfig({
],
worker: {
format: "es",
rollupOptions: {
rolldownOptions: {
output: {
entryFileNames: "[name].js",
},
Expand All @@ -50,7 +38,7 @@ export default defineConfig({
fileName: (_, entryName) => `${entryName}.js`,
formats: ["es"],
},
rollupOptions: {
rolldownOptions: {
external: ["react", "@uwdata/mosaic-core", "@uwdata/mosaic-spec", "@uwdata/mosaic-sql", "@uwdata/vgplot"],
output: {
chunkFileNames: "chunk-[hash].js",
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36 changes: 18 additions & 18 deletions packages/examples/package.json
Original file line number Diff line number Diff line change
Expand Up @@ -12,25 +12,25 @@
},
"devDependencies": {
"embedding-atlas": "*",
"@sveltejs/vite-plugin-svelte": "^6.1.0",
"@tailwindcss/postcss": "^4.1.11",
"@tsconfig/svelte": "^5.0.4",
"@types/react": "^19.1.12",
"@types/react-dom": "^19.1.9",
"@uwdata/mosaic-core": ">=0.19.0",
"@uwdata/mosaic-spec": ">=0.19.0",
"@uwdata/mosaic-sql": ">=0.19.0",
"@uwdata/vgplot": ">=0.19.0",
"postcss": "^8.5.6",
"react": "^19.1.1",
"react-dom": "^19.1.1",
"svelte": "^5.37.3",
"svelte-check": "^4.3.1",
"svelte-spa-router": "^4.0.1",
"tailwindcss": "^4.1.11",
"@sveltejs/vite-plugin-svelte": "^7.0.0",
"@tailwindcss/postcss": "^4.2.2",
"@tsconfig/svelte": "^5.0.8",
"@types/react": "^19.2.14",
"@types/react-dom": "^19.2.3",
"@uwdata/mosaic-core": ">=0.21.1",
"@uwdata/mosaic-spec": ">=0.21.1",
"@uwdata/mosaic-sql": ">=0.21.1",
"@uwdata/vgplot": ">=0.21.1",
"postcss": "^8.5.8",
"react": "^19.2.4",
"react-dom": "^19.2.4",
"svelte": "^5.54.1",
"svelte-check": "^4.4.5",
"svelte-spa-router": "^5.0.0",
"tailwindcss": "^4.2.2",
"tslib": "^2.8.1",
"typescript": "^5.9.2",
"vite": "^7.0.6",
"typescript": "^5.9.3",
"vite": "^8.0.1",
"vite-plugin-dts": "^4.5.4"
}
}
4 changes: 4 additions & 0 deletions packages/examples/src/vite-env.d.ts
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
// Copyright (c) 2025 Apple Inc. Licensed under MIT License.

/// <reference types="svelte" />
/// <reference types="vite/client" />
2 changes: 1 addition & 1 deletion packages/umap-wasm/package.json
Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,6 @@
"runtime.js"
],
"devDependencies": {
"vitest": "^4.0.9"
"vitest": "^4.1.0"
}
}
10 changes: 6 additions & 4 deletions packages/utils/package.json
Original file line number Diff line number Diff line change
Expand Up @@ -9,13 +9,15 @@
"test": "vitest run"
},
"files": [
"dist"
"dist",
"vite"
],
"exports": {
".": "./dist/index.js"
".": "./dist/index.js",
"./vite": "./vite/index.js"
},
"devDependencies": {
"typescript": "^5.9.2",
"vitest": "^4.0.9"
"typescript": "^5.9.3",
"vitest": "^4.1.0"
}
}
26 changes: 26 additions & 0 deletions packages/utils/vite/index.js
Original file line number Diff line number Diff line change
@@ -0,0 +1,26 @@
// Copyright (c) 2025 Apple Inc. Licensed under MIT License.

export function fixAbsoluteImport() {
// Fix a bug where vite outputs absolute paths for workers.
return {
name: "fix-absolute-import",
renderChunk(code) {
// new URL(/* @vite-ignore */ "/assets/worker_main-DWGFbKCZ.js"
// ->
// new URL("./assets/worker_main-DWGFbKCZ.js"
return code
.replace(/new\s+URL\(\s*(\/\*[\s\S]*?\*\/\s*)?"\//g, `new URL("./`)
.replace(/"" \+ import\.meta\.url/g, "import.meta.url");
},
};
}

export function forceInlineWorker() {
return {
name: "force-inline-worker",
transform(code, id) {
// Hack: if we prefix the url with `"" +`, rollup will inline the worker.
return code.replace(/new Worker\(new URL\(/g, `new Worker("" + new URL(`);
},
};
}
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