feat(versioning): version-history retention cleanup job by mikebridge · Pull Request #41075 · apache/superset

mikebridge · 2026-06-15T21:16:04Z

SUMMARY

Adds a time-based version-history retention cleanup job for the entity-versioning feature. As entities (dashboards, charts, datasets and their columns/metrics) are edited, the versioning subsystem accumulates shadow rows in *_version tables plus version_transaction / version_changes records. Without pruning, those tables grow unbounded. This PR adds a daily Celery beat task that deletes version history older than a configurable window while always preserving each entity's current (live) state.

API: none (background Celery beat task). This PR adds no REST/HTTP surface — only a Celery task, a config key, an index migration, and a startup sanity check.

Depends on the entity-versioning base infrastructure (#41176), which has merged — this PR's diff is standalone.

What this adds

superset/tasks/version_history_retention.py — the version_history.prune_old_versions Celery task. For every version_transaction whose issued_at is older than the retention window it deletes the owned parent + child + M2M (dashboard_slices_version) shadow rows and the version_transaction row itself; version_changes rows are removed by ON DELETE CASCADE.
Preservation rule: if any shadow row anchored at a transaction is live (end_transaction_id IS NULL) — parent, child, or the M2M association — the whole transaction and all of its shadow/change rows are kept, regardless of age. This keeps a still-live child (e.g. an unedited column anchored at an older transaction than its parent's current row) from being silently stripped. Baseline rows (operation_type = 0) and closed historical rows age out like everything else.
SUPERSET_VERSION_HISTORY_RETENTION_DAYS config (default 30, read from the env var of the same name; 0 or negative disables the prune and short-circuits to a no-op). Read from the global config; a per-workspace override is a planned follow-up and is not in this PR.
CELERYBEAT_SCHEDULE entry version_history.prune_old_versions, daily at 03:00.
DB migration d3b9a1f6c204 — btree index on version_transaction.issued_at so the candidate scan is a range scan, not a full-table scan. Idempotent (create_index skips if present).
Startup _warn_if_retention_beat_missing check — logs a WARN when an operator's custom CELERY_CONFIG silently drops the beat entry (capture keeps writing rows but the prune never runs, so disk grows unbounded).
Unit + integration tests.

Safety / correctness properties

Idempotent: a second run finds nothing older than the cutoff that isn't preserved.
SERIALIZABLE isolation with bounded inline retry (3 attempts, exponential backoff) on serialization conflicts; avoids a TOCTOU window where a save committing mid-prune could drop a row that just became live.
Bounded per pass: drains the backlog in id-ordered windows of 1000 candidate transactions; bind-parameter lists chunked at 500 to stay inside SQLite's SQLITE_MAX_VARIABLE_NUMBER floor.
Observable: statsd metrics under superset.versioning.retention.* (pruned_transactions gauge per run; .skipped when disabled / no versioned classes; .retried on serialization conflict; .failed on terminal failure). Runs entirely off the save path on its own DB connection.

BEFORE/AFTER SCREENSHOTS OR ANIMATED GIF

N/A — backend-only, no UI.

TESTING INSTRUCTIONS

# Unit (metric/branch coverage: disabled, no-versioned-classes, retry, terminal failure)
pytest tests/unit_tests/tasks/test_version_history_retention.py

# Integration (backdates issued_at; asserts cutoff prune, live row + live child/M2M
# preservation, baseline ages out, serialization-retry behavior)
pytest tests/integration_tests/versioning/retention_prune_tests.py

QA NOTES

Set SUPERSET_VERSION_HISTORY_RETENTION_DAYS and back-date version_transaction.issued_at to simulate aged history:

Window cutoff: transactions older than the window are pruned; transactions inside the window are untouched (boundary issued_at < now - N days).
Live-row preservation: after pruning, every entity still has its live row (end_transaction_id IS NULL); the historical chain (including the synthetic baseline) is gone for entities not edited within the window.
Live child / M2M preservation (key regression): edit a dashboard so a column/metric or a dashboard_slices_version association stays live at an older transaction than the parent's current live row; confirm the prune does not delete that still-live child/association even though its anchoring transaction predates the cutoff.
0 disables: set to 0 (and a negative number); confirm no-op + superset.versioning.retention.skipped, no deletions.
Idempotent re-run: run twice back-to-back; the second run deletes nothing (pruned_transactions == 0).
Batch behavior: create >1000 prunable transactions; confirm the backlog drains across windows in one invocation and the loop terminates.
Cascade: pruned version_transaction rows take their version_changes rows with them; no orphaned shadow rows remain.
Beat-missing warning: override CELERY_CONFIG without the version_history.prune_old_versions entry; confirm the startup WARN fires.
Migration: apply and roll back d3b9a1f6c204; confirm ix_version_transaction_issued_at is created/dropped and re-applying upgrade is safe.
Dialects: exercise on Postgres/MySQL and SQLite (single-writer) — bind-param chunking matters most on SQLite.

ADDITIONAL INFORMATION

Has associated issue:
Required feature flags:
Changes UI
Includes DB Migration (follow approval process in SIP-59) — adds an index on version_transaction.issued_at
Introduces new feature (Celery beat task + SUPERSET_VERSION_HISTORY_RETENTION_DAYS config key — no HTTP API)
Removes existing feature or API

Builds on #41176 (base infrastructure, merged).

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codecov · 2026-06-16T00:12:57Z

Codecov Report

❌ Patch coverage is 73.88889% with 47 lines in your changes missing coverage. Please review.
✅ Project coverage is 65.26%. Comparing base (6856d0f) to head (672fbda).
⚠️ Report is 13 commits behind head on master.

Files with missing lines	Patch %	Lines
superset/tasks/version_history_retention.py	80.68%	20 Missing and 8 partials ⚠️
superset/config.py	37.50%	9 Missing and 1 partial ⚠️
superset/initialization/__init__.py	61.53%	2 Missing and 3 partials ⚠️
superset/mcp_service/sql_lab/tool/execute_sql.py	20.00%	4 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff            @@
##           master   #41075    +/-   ##
========================================
  Coverage   65.25%   65.26%            
========================================
  Files        2795     2796     +1     
  Lines      157639   157815   +176     
  Branches    36052    36078    +26     
========================================
+ Hits       102869   102998   +129     
- Misses      52793    52827    +34     
- Partials     1977     1990    +13

Flag	Coverage Δ
hive	`38.31% <8.33%> (-0.07%)`	⬇️
mysql	`57.59% <73.88%> (+0.03%)`	⬆️
postgres	`57.62% <73.88%> (+0.03%)`	⬆️
presto	`40.23% <8.33%> (-0.08%)`	⬇️
python	`59.03% <73.88%> (+0.03%)`	⬆️
sqlite	`57.25% <73.88%> (+0.04%)`	⬆️
unit	`100.00% <ø> (ø)`

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Apply code-review fixes to the version-history retention job (apache#41075): - Drop the version_transaction.issued_at index migration. The prune's candidate query (ORDER BY id LIMIT) is driven by the primary key on every supported engine (clustered on InnoDB, rowid on SQLite, PK index on Postgres) and would never choose a standalone issued_at index, which would only force a filesort before the LIMIT. ids are monotonic with issued_at, so the PK scan already reads prunable rows efficiently. Removing it also drops a write-blocking non-concurrent CREATE INDEX at deploy. - Match the retention beat entry by each entry's `task` value, not the schedule key, so a task registered under a different key no longer triggers a spurious startup warning. - Replace deprecated datetime.utcnow() with a tz-aware clock reduced to naive UTC (preserving the naive-vs-naive comparison against issued_at). - Fix docs referencing CELERYBEAT_SCHEDULE -> CeleryConfig.beat_schedule (task docstring, initializer comment, UPDATING.md). - Clarify that the OperationalError retry catch is intentionally broad (serialization failures plus transient DB errors, all safe to retry). Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

bito-code-review

Code Review Agent Run #072250

Actionable Suggestions - 1

superset/migrations/versions/2026-06-15_16-30_d3b9a1f6c204_version_transaction_issued_at_index.py - 1
- Missing migration unit test · Line 1-48

Additional Suggestions - 1

tests/unit_tests/config_test.py - 1
- Log capture level not configured · Line 50-60
  
  The `caplog` fixture captures logs at WARNING level by default, but the logger for `superset.config` may not have its level propagated in unit test contexts. Other tests in this repo use `caplog.at_level(logging.WARNING)` explicitly (see `tests/unit_tests/mcp_service/test_auth_safeguards.py:205`). Without this, the log assertion may pass inconsistently depending on pytest configuration.

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tests/integration_tests/versioning/retention_prune_tests.py - 2
- Missing session cleanup · Line 356-356
- CWE-477: Deprecated datetime.utcnow() · Line 163-163

Review Details

Files reviewed - 12 · Commit Range: 3b249a2..4acf1d9
- superset/config.py
- superset/initialization/__init__.py
- superset/mcp_service/sql_lab/tool/execute_sql.py
- superset/migrations/versions/2026-06-15_16-30_d3b9a1f6c204_version_transaction_issued_at_index.py
- superset/tasks/celery_app.py
- superset/tasks/version_history_retention.py
- superset/versioning/queries.py
- tests/integration_tests/versioning/retention_prune_tests.py
- tests/unit_tests/config_test.py
- tests/unit_tests/initialization_test.py
- tests/unit_tests/semantic_layers/mapper_test.py
- tests/unit_tests/tasks/test_version_history_retention.py
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bito-code-review · 2026-07-14T01:32:18Z

Code Review Agent Run #30a403

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Additional Suggestions - 2

superset/config.py - 1
- Silent under-clamp on oversized retention · Line 1614-1622
  
  `retention_days > _MAX_VERSION_HISTORY_RETENTION_DAYS` returns the default (30 days) instead of the maximum. A user who intentionally sets a large value silently receives 30-day retention — a 1,000× discrepancy with only a warning log. Clamp to `_MAX_VERSION_HISTORY_RETENTION_DAYS` to make overflow visible and proportional to intent.
superset/mcp_service/sql_lab/tool/execute_sql.py - 1
- Missing docstring on new helper · Line 247-265
  
  Update the docstring of `_log_execution_result` to include detailed descriptions for `response` and `ctx` parameters, and outline its behavior on success and failure.

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tests/unit_tests/tasks/test_version_history_retention.py - 2
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tests/unit_tests/migrations/test_version_transaction_issued_at_index.py - 1
- Missing future annotations import · Line 19-19

Review Details

Files reviewed - 13 · Commit Range: fc51b23..db87a6b
- superset/config.py
- superset/initialization/__init__.py
- superset/mcp_service/sql_lab/tool/execute_sql.py
- superset/migrations/versions/2026-06-15_16-30_d3b9a1f6c204_version_transaction_issued_at_index.py
- superset/tasks/celery_app.py
- superset/tasks/version_history_retention.py
- superset/versioning/queries.py
- tests/integration_tests/versioning/retention_prune_tests.py
- tests/unit_tests/config_test.py
- tests/unit_tests/initialization_test.py
- tests/unit_tests/migrations/test_version_transaction_issued_at_index.py
- tests/unit_tests/semantic_layers/mapper_test.py
- tests/unit_tests/tasks/test_version_history_retention.py
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rusackas

Good timing, #41176 landed, so this isn't stacked anymore, diff looks simpler. One thing I'm not following though why are execute_sql.py and the semantic_layers/mapper_test.py tweaks are in here, or if either related to the retention job. Maybe bycatch, or just part of the bigger plan?

rusackas

Good timing, #41176 landed, so this isn't stacked anymore, diff looks simpler. One thing I'm not following though why are execute_sql.py and the semantic_layers/mapper_test.py tweaks are in here, or if either related to the retention job. Maybe bycatch, or just part of the bigger plan?

A Celery beat task that prunes version_transaction / version_changes / shadow rows beyond the configured retention window, so the version tables don't grow unbounded once capture is enabled. Preserves live child/M2M rows, batches the deletes with bind/retry hardening, and adds an index on version_transaction.issued_at for the prune scan. Stacked on the versioning base infrastructure (apache#41176). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

Apply review fixes to the version-history retention job: retain and document the issued_at index based on planner testing, add migration contract tests, match Celery beat entries by task value, use timezone-aware UTC, correct configuration documentation, and clarify retry handling.

The SQLAlchemy 2.0 enforcement added on master turns the implicit- autocommit RemovedIn20Warning into an error; run the migration DDL under engine.begin() instead of a bare connection. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

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Code Review Agent Run #4b8916

Actionable Suggestions - 1

tests/integration_tests/versioning/retention_prune_tests.py - 1
- Deprecated datetime.utcnow() in test · Line 432-432

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tests/integration_tests/versioning/retention_prune_tests.py - 5
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- Deprecated datetime.utcnow() in test · Line 260-260
- Deprecated datetime.utcnow() call · Line 163-163
- Deprecated datetime.utcnow() call · Line 260-260
- Deprecated datetime.utcnow() call · Line 432-432

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Files reviewed - 13 · Commit Range: 2038b41..77b4c56
- superset/config.py
- superset/initialization/__init__.py
- superset/mcp_service/sql_lab/tool/execute_sql.py
- superset/migrations/versions/2026-07-27_10-00_d3b9a1f6c204_version_transaction_issued_at_index.py
- superset/tasks/celery_app.py
- superset/tasks/version_history_retention.py
- superset/versioning/queries.py
- tests/integration_tests/versioning/retention_prune_tests.py
- tests/unit_tests/config_test.py
- tests/unit_tests/initialization_test.py
- tests/unit_tests/migrations/test_version_transaction_issued_at_index.py
- tests/unit_tests/semantic_layers/mapper_test.py
- tests/unit_tests/tasks/test_version_history_retention.py
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Replace the three deprecated datetime.utcnow() call sites in the prune tests with the naive-UTC form the fourth site already uses, and soften the version-number loop docstring: transactions still anchoring a live row survive past the retention window, bounded by entity size rather than edit volume. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

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pull-request-size Bot added the size/XXL label Jun 15, 2026

github-actions Bot added i18n Namespace | Anything related to localization risk:db-migration PRs that require a DB migration i18n:french Translation related to French language api Related to the REST API risk:ci-script PR modifies scripts that execute in CI (supply chain risk) labels Jun 15, 2026

mikebridge mentioned this pull request Jun 15, 2026

feat(versioning): capture and expose version history for charts, dashboards, and datasets #39603

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mikebridge force-pushed the sc-111099-version-history-retention branch 2 times, most recently from 8e13952 to e7848e7 Compare June 15, 2026 23:53

mikebridge force-pushed the sc-111099-version-history-retention branch 3 times, most recently from ac1e444 to 2979f14 Compare June 18, 2026 00:45

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mikebridge force-pushed the sc-111099-version-history-retention branch 9 times, most recently from daf5db8 to 145356f Compare June 29, 2026 15:38

mikebridge force-pushed the sc-111099-version-history-retention branch from 145356f to 997a89f Compare June 29, 2026 17:50

mikebridge marked this pull request as ready for review June 29, 2026 17:50

mikebridge requested review from michael-s-molina and villebro as code owners June 29, 2026 17:50

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raymondtangsc mentioned this pull request Jul 20, 2026

[replay] feat(versioning): version-history retention cleanup job raymondtangsc/superset#19

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rusackas merged commit a73e248 into apache:master Jul 28, 2026
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SUMMARY

BEFORE/AFTER SCREENSHOTS OR ANIMATED GIF

TESTING INSTRUCTIONS

QA NOTES

ADDITIONAL INFORMATION

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