Skip to content

Implement replacement for the now-deprecated summarizeAssayByGroup.#225

Merged
alanocallaghan merged 2 commits into
develfrom
replace-summary
Apr 6, 2026
Merged

Implement replacement for the now-deprecated summarizeAssayByGroup.#225
alanocallaghan merged 2 commits into
develfrom
replace-summary

Conversation

@LTLA

@LTLA LTLA commented Apr 6, 2026

Copy link
Copy Markdown
Collaborator

A consequence of the grand deprecation of scuttle functions in favor of scrapper. I don't want scater to add a hard Depends on scrapper so I've just implemented a quick-and-dirty summation function (inspired by a suggestion from @plger). This should be good enough given that we're only operating on a subset of features.

Note that we might need to add a Suggests on scrapper to replace the various deprecated scuttle functions in the Examples, e.g., normalizeCounts() being replaced by normalizeRnaCounts.se().

Comment thread R/reexports.R Outdated
@alanocallaghan

Copy link
Copy Markdown
Owner

Looks good, I've not tested but I'll trust you as the author of both

@alanocallaghan alanocallaghan merged commit c7f8525 into devel Apr 6, 2026
2 checks passed
@alanocallaghan alanocallaghan deleted the replace-summary branch April 6, 2026 15:57
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants