Add flexible unet for encoder-decoder structure#4801
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A flexible U-Net implements an encoder-decoder network. This network uses U-Net as decoder and efficientnet-V1 family as encoder. The encoder type can be set by passing parameters 'efficientnet-b0, ..., efficientnet-b7, efficientnet-l2' to the initialize function. Signed-off-by: binliu <binliu@nvidia.com>
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Nic-Ma
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… test file for flexible unet. Signed-off-by: binliunls <binliu@nvidia.com>
…f flexible unet Signed-off-by: binliunls <binliu@nvidia.com>
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Hi @binliunls , I think the error of CI is due to the image size in the tests. Thanks. |
Signed-off-by: binliunls <binliu@nvidia.com>
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Nic-Ma
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Looks good to me as the first version implementation.
We can add more backbone support in the following PRs.
Thanks.
Signed-off-by: binliunls <binliu@nvidia.com>
… into 4533-flexible-unet update the repo to remote repo
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Signed-off-by: binliunls <binliu@nvidia.com>
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yiheng-wang-nv
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…o unitest since the download may cost a lot of time. Signed-off-by: binliunls <binliu@nvidia.com>
… into 4533-flexible-unet Update to the newest repo.
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Signed-off-by: binliu <binliu@nvidia.com>
…e the dim parameter of segmentation head to spatial_dims. Signed-off-by: binliu <binliu@nvidia.com>
Signed-off-by: binliu <binliu@nvidia.com>
… to fit encoder features Signed-off-by: binliu <binliu@nvidia.com>
Signed-off-by: binliu <binliu@nvidia.com>
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wyli
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Thanks, it looks good to me. I'll merge this pr if all tests work fine.
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A flexible U-Net implements an encoder-decoder network. This network uses U-Net
as decoder and efficientnet-V1 family as encoder. The encoder type can be set
by passing parameters 'efficientnet-b0, ..., efficientnet-b7, efficientnet-l2'
to the initialize function.
Signed-off-by: binliu binliu@nvidia.com
Fixes #4533 .
Description
Add a new encoder-decoder defined network structure to monai. Currently the script is
the very beginning version of it and can only support U-Net as decoder and efficientnet-
V1 family as encoder.
Aim to make this more flexible and add more networks to it.
Status
Ready
Types of changes
./runtests.sh -f -u --net --coverage../runtests.sh --quick --unittests --disttests.make htmlcommand in thedocs/folder.