PathoGenOmics Lab
An interdisciplinary research group dedicated to unraveling the complexities of microbial pathogens and their relationships with hosts.
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Showing 10 of 15 repositories
- VIPERA Public
A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis
- get_MNV Public
Identifies multiple SNVs within the same codon, reclassifies them as MNVs, and accurately computes resulting amino acid changes from genomic reads
- snpick Public
snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage and high-speed performance.
- afwdist Public
A lightweight tool to calculate a pairwise distance metric based on fixed and non-fixed allele frequencies
- transcluster Public
A Snakemake workflow to find SARS-CoV-2 clusters in a reference phylogeny and estimate their normalized clustering index
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