Per my work on expanding OPMI to cover metadata within SEA-CDM, there a couple of new terms I would like to propose (along with definitions). I have brought this up in last meeting but would like to submit them to avoid using my current placeholder terms within PMMO. I have included their intended parent and definition, through we can discuss axioms if approved.
Name | Definition | Parent | ParentID | PMMO_ID
study | An investigation that attempts to answer a question through the use of one or more planned procedures. | planned process | OBI_0000011 | OPMI_0000626
experiment | A planned process that is realized . | planned process | OBI_0000011 | OPMI_0000627
occurrence | A process that is realized by an external participant to an organism that is a participant of an study. | process | GO_0008150 | OPMI_0000630
documenation | An information content entity that is about a study, part of a study, or participant of a study. | information content entity | IAO_0000030 | OPMI_0000633
meta-analysis study | A study that conducts a meta-analysis of data collected from multiple other studies. | study | OPMI_0000626 | OPMI_0000635
experimental study | A study that conducts a controlled experiments on a sets of organisms using a man-made intervention. | study | OPMI_0000626 | OPMI_0000636
observation study | A study that conducts an observational experiments on a set of organisms in where there is no man-made interventions. | study | OPMI_0000626 | OPMI_0000637
clinical visit experiment | An experiment that conducts an intervention with the purpose to adress the participating organisms medical state. | experiment | OPMI_0000627 | OPMI_0000638
longitudinal study | A study that has a longitudinal study design for a plan specification. | study | OPMI_0000626 | OPMI_0000639
scientific experiment | An experiment that conducts an intervention with the purpose to adress an underlying question of scientific inquiry. | experiment | OPMI_0000627 | OPMI_0000640
experimental control | An experiment that does not apply a specific intervention before sample generation to be done in comparison to other experiments | experiment | OPMI_0000627 | OPMI_0000641
environmental exposure | A biological process in which an organism is in direct contact and proximity with a material entity such that it realizes a role as part of some process | occurrence | OPMI_0000630 | OPMI_0000642
biosample | A specimen that has been directly collected from an organism. | sample | OBI_0000070 | OPMI_0000643
experimental assay | An assay that generates measurement data. | assay | OBI_0000070 | OPMI_0000644
observational assay | An assay that generates medical observation data. | assay | OBI_0000070 | OPMI_0000645
Per my work on expanding OPMI to cover metadata within SEA-CDM, there a couple of new terms I would like to propose (along with definitions). I have brought this up in last meeting but would like to submit them to avoid using my current placeholder terms within PMMO. I have included their intended parent and definition, through we can discuss axioms if approved.
Name | Definition | Parent | ParentID | PMMO_ID
study | An investigation that attempts to answer a question through the use of one or more planned procedures. | planned process | OBI_0000011 | OPMI_0000626
experiment | A planned process that is realized . | planned process | OBI_0000011 | OPMI_0000627
occurrence | A process that is realized by an external participant to an organism that is a participant of an study. | process | GO_0008150 | OPMI_0000630
documenation | An information content entity that is about a study, part of a study, or participant of a study. | information content entity | IAO_0000030 | OPMI_0000633
meta-analysis study | A study that conducts a meta-analysis of data collected from multiple other studies. | study | OPMI_0000626 | OPMI_0000635
experimental study | A study that conducts a controlled experiments on a sets of organisms using a man-made intervention. | study | OPMI_0000626 | OPMI_0000636
observation study | A study that conducts an observational experiments on a set of organisms in where there is no man-made interventions. | study | OPMI_0000626 | OPMI_0000637
clinical visit experiment | An experiment that conducts an intervention with the purpose to adress the participating organisms medical state. | experiment | OPMI_0000627 | OPMI_0000638
longitudinal study | A study that has a longitudinal study design for a plan specification. | study | OPMI_0000626 | OPMI_0000639
scientific experiment | An experiment that conducts an intervention with the purpose to adress an underlying question of scientific inquiry. | experiment | OPMI_0000627 | OPMI_0000640
experimental control | An experiment that does not apply a specific intervention before sample generation to be done in comparison to other experiments | experiment | OPMI_0000627 | OPMI_0000641
environmental exposure | A biological process in which an organism is in direct contact and proximity with a material entity such that it realizes a role as part of some process | occurrence | OPMI_0000630 | OPMI_0000642
biosample | A specimen that has been directly collected from an organism. | sample | OBI_0000070 | OPMI_0000643
experimental assay | An assay that generates measurement data. | assay | OBI_0000070 | OPMI_0000644
observational assay | An assay that generates medical observation data. | assay | OBI_0000070 | OPMI_0000645