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@Genentech

Genentech

Dedicated to pursuing groundbreaking science to discover and develop medicines

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  1. BRAID BRAID Public

    BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.

    224 10

  2. scimilarity scimilarity Public

    A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

    Python 244 28

  3. gReLU gReLU Public

    gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

    Python 323 53

  4. SpatialAgent SpatialAgent Public

    An AI agent for spatial biology

    Python 166 22

  5. equifold equifold Public

    Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

    Python 129 19

  6. gneprop gneprop Public

    GNEprop is a graph neural network-based model to predict antibacterial activity from molecular structures in virtual screening settings.

    Jupyter Notebook 45 5

Repositories

Showing 10 of 138 repositories
  • IHC-reaction-diffusion Public

    Code associated with Perng et al., "Practical quantification of immunohistochemistry antigen concentrations and reaction-diffusion parameters"

    Genentech/IHC-reaction-diffusion’s past year of commit activity
    MATLAB 0 MIT 0 0 0 Updated Apr 21, 2026
  • scallops Public

    SCALLOPS (Scalable Library for Optical Pooled Screens) is a comprehensive Python package designed to streamline and scale the analysis of Optical Pooled Screens (OPS) for biological data.

    Genentech/scallops’s past year of commit activity
    Python 2 0 0 1 Updated Apr 21, 2026
  • jmpost Public
    Genentech/jmpost’s past year of commit activity
    R 17 4 55 (1 issue needs help) 2 Updated Apr 21, 2026
  • SIGnature Public

    SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) datasets through precomputed gene attribution scores.

    Genentech/SIGnature’s past year of commit activity
    Python 24 4 0 0 Updated Apr 16, 2026
  • gReLU Public

    gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

    Genentech/gReLU’s past year of commit activity
    Python 323 MIT 53 21 4 Updated Apr 14, 2026
  • MoCAVI Public
    Genentech/MoCAVI’s past year of commit activity
    Python 1 0 0 0 Updated Apr 14, 2026
  • SpatialAgent Public

    An AI agent for spatial biology

    Genentech/SpatialAgent’s past year of commit activity
    Python 166 MIT 22 1 0 Updated Apr 13, 2026
  • checked Public

    batch R CMD check management

    Genentech/checked’s past year of commit activity
    R 8 1 15 0 Updated Apr 10, 2026
  • gneprop Public

    GNEprop is a graph neural network-based model to predict antibacterial activity from molecular structures in virtual screening settings.

    Genentech/gneprop’s past year of commit activity
    Jupyter Notebook 45 5 1 0 Updated Apr 8, 2026
  • compbiobench-runner Public

    CompBioBench: A benchmark of 100 diverse, verifiable questions for agents for computational biology (scripts for running agents)

    Genentech/compbiobench-runner’s past year of commit activity
    Python 24 MIT 5 0 0 Updated Apr 6, 2026
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