Update submodules to ones consistent with the cesm3_0_beta05 rpointer updates

.gitmodules

@@ -36,7 +36,7 @@ fxDONOTUSEurl = https://github.com/NCAR/fates-release
 [submodule "cism"]
 path = components/cism
 url = https://github.com/ESCOMP/CISM-wrapper
-fxtag = cismwrap_2_2_002
+fxtag = cismwrap_2_2_005
 fxrequired = ToplevelRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/ESCOMP/CISM-wrapper
@@ -60,31 +60,31 @@ fxDONOTUSEurl = https://github.com/ESCOMP/MOSART
 [submodule "mizuRoute"]
 path = components/mizuRoute
 url = https://github.com/ESCOMP/mizuRoute
-fxtag = cesm-coupling.n02_v2.1.3
+fxtag = cesm-coupling.n03_v2.2.0
 fxrequired = ToplevelRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/ESCOMP/mizuRoute
 
 [submodule "ccs_config"]
 path = ccs_config
 url = https://github.com/ESMCI/ccs_config_cesm.git
-fxtag = ccs_config_cesm1.0.10
+fxtag = ccs_config_cesm1.0.16
 fxrequired = ToplevelRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/ESMCI/ccs_config_cesm.git
 
 [submodule "cime"]
 path = cime
 url = https://github.com/ESMCI/cime
-fxtag = cime6.1.49
+fxtag = cime6.1.59
 fxrequired = ToplevelRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/ESMCI/cime
 
 [submodule "cmeps"]
 path = components/cmeps
 url = https://github.com/ESCOMP/CMEPS.git
-fxtag = cmeps1.0.32
+fxtag = cmeps1.0.33
 fxrequired = ToplevelRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/ESCOMP/CMEPS.git
@@ -100,7 +100,7 @@ fxDONOTUSEurl = https://github.com/ESCOMP/CDEPS.git
 [submodule "share"]
 path = share
 url = https://github.com/ESCOMP/CESM_share
-fxtag = share1.1.6
+fxtag = share1.1.7
 fxrequired = ToplevelRequired
 # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed
 fxDONOTUSEurl = https://github.com/ESCOMP/CESM_share

src/cpl/lilac/lnd_comp_esmf.F90

@@ -374,7 +374,7 @@ subroutine lnd_init(comp, import_state, export_state, clock, rc)
     !--------------------------------
     ! Finish initializing ctsm
     !--------------------------------
-    call initialize2(ni,nj)
+    call initialize2(ni,nj, currTime)
     call ESMF_LogWrite(subname//"ctsm initialize2 done...", ESMF_LOGMSG_INFO)
 
     !--------------------------------
@@ -708,41 +708,41 @@ subroutine lnd_run(gcomp, import_state, export_state, clock, rc)
        call update_rad_dtime(doalb)
 
        !--------------------------------
-       ! Determine if time to write restart
+       ! Determine if time to stop
        !--------------------------------
 
-       call ESMF_ClockGetAlarm(clock, alarmname='lilac_restart_alarm', alarm=alarm, rc=rc)
+       call ESMF_ClockGetAlarm(clock, alarmname='lilac_stop_alarm', alarm=alarm, rc=rc)
        if (ChkErr(rc,__LINE__,u_FILE_u)) return
 
        if (ESMF_AlarmIsRinging(alarm, rc=rc)) then
           if (ChkErr(rc,__LINE__,u_FILE_u)) return
-          rstwr = .true.
+          nlend = .true.
           call ESMF_AlarmRingerOff( alarm, rc=rc )
           if (ChkErr(rc,__LINE__,u_FILE_u)) return
        else
-          rstwr = .false.
+          nlend = .false.
        endif
        if (masterproc) then
-          write(iulog,*)' restart alarm is ',rstwr
+          write(iulog,*)' stop alarm is ',nlend
        end if
 
        !--------------------------------
-       ! Determine if time to stop
+       ! Determine if time to write restart
        !--------------------------------
 
-       call ESMF_ClockGetAlarm(clock, alarmname='lilac_stop_alarm', alarm=alarm, rc=rc)
+       call ESMF_ClockGetAlarm(clock, alarmname='lilac_restart_alarm', alarm=alarm, rc=rc)
        if (ChkErr(rc,__LINE__,u_FILE_u)) return
 
        if (ESMF_AlarmIsRinging(alarm, rc=rc)) then
           if (ChkErr(rc,__LINE__,u_FILE_u)) return
-          nlend = .true.
+          rstwr = .true.
           call ESMF_AlarmRingerOff( alarm, rc=rc )
           if (ChkErr(rc,__LINE__,u_FILE_u)) return
        else
-          nlend = .false.
+          rstwr = .false.
        endif
        if (masterproc) then
-          write(iulog,*)' stop alarm is ',nlend
+          write(iulog,*)' restart alarm is ',rstwr
        end if
 
        !--------------------------------

src/cpl/nuopc/lnd_comp_nuopc.F90

@@ -1040,9 +1040,10 @@ subroutine ModelSetRunClock(gcomp, rc)
        if (ChkErr(rc,__LINE__,u_FILE_u)) return
        call ESMF_LogWrite(subname//'setting alarms for ' // trim(name), ESMF_LOGMSG_INFO)
 
-       !----------------
+       !----------------------------------------------------------------------------------
        ! Stop alarm
-       !----------------
+       ! MUST be set before the restart alarm in case restarts happen at the stop alarm
+       !----------------------------------------------------------------------------------
        call NUOPC_CompAttributeGet(gcomp, name="stop_option", value=stop_option, rc=rc)
        if (ChkErr(rc,__LINE__,u_FILE_u)) return
 
@@ -1064,9 +1065,10 @@ subroutine ModelSetRunClock(gcomp, rc)
        call ESMF_AlarmSet(stop_alarm, clock=mclock, rc=rc)
        if (ChkErr(rc,__LINE__,u_FILE_u)) return
 
-       !----------------
+       !----------------------------------------------------------------------------------
        ! Restart alarm
-       !----------------
+       ! MUST be set after the stop alarm in case restarts happen at the stop alarm
+       !----------------------------------------------------------------------------------
        call NUOPC_CompAttributeGet(gcomp, name="restart_option", value=restart_option, rc=rc)
        if (ChkErr(rc,__LINE__,u_FILE_u)) return
 

src/utils/clm_time_manager.F90

@@ -19,9 +19,9 @@ module clm_time_manager
 
    public ::&
         set_timemgr_init,         &! setup startup values
-        timemgr_init,             &! time manager initialization
+        timemgr_init,             &! time manager initialization, called always
         timemgr_restart_io,       &! read/write time manager restart info and restart time manager
-        timemgr_restart,          &! restart the time manager using info from timemgr_restart
+        timemgr_restart,          &! check that time manager is setup coorectly upcon restart
         timemgr_datediff,         &! calculate difference between two time instants
         advance_timestep,         &! increment timestep number
         get_curr_ESMF_Time,       &! get current time in terms of the ESMF_Time
@@ -157,7 +157,7 @@ subroutine set_timemgr_init( calendar_in,      start_ymd_in,     start_tod_in, r
     !
     character(len=*), parameter :: sub = 'clm::set_timemgr_init'
 
-    if ( timemgr_set ) call shr_sys_abort( sub//":: timemgr_init or timemgr_restart already called" )
+    if ( timemgr_set ) call shr_sys_abort( sub//":: timemgr_init already called" )
     if (present(calendar_in)      ) calendar         = trim(calendar_in)
     if (present(start_ymd_in)     ) start_ymd        = start_ymd_in
     if (present(start_tod_in)     ) start_tod        = start_tod_in
@@ -505,7 +505,10 @@ end subroutine timemgr_restart_io
   subroutine timemgr_restart()
 
     !---------------------------------------------------------------------------------
-    ! Restart the ESMF time manager using the synclock for ending date.
+    ! On restart do some checkcing to make sure time is synchronized with the clock from CESM.
+    ! Set a couple of variables, and advance the clock, so time is aligned properly.
+   !
+    ! timemgr_init MIST be called before this
     !
 
     character(len=*), parameter :: sub = 'clm::timemgr_restart'
@@ -517,13 +520,10 @@ subroutine timemgr_restart()
     type(ESMF_TimeInterval) :: day_step_size ! day step size
     type(ESMF_TimeInterval) :: step_size     ! timestep size
     !---------------------------------------------------------------------------------
-    call timemgr_spmdbcast( )
-
-    ! Initialize calendar from restart info
-
-    call init_calendar()
+    ! Check that timemgr_init was already called
+    if ( .not. check_timemgr_initialized(sub) ) return
 
-    ! Initialize the timestep from restart info
+    ! Initialize the timestep
 
     dtime = rst_step_sec
 
@@ -555,12 +555,6 @@ subroutine timemgr_restart()
 
     tm_first_restart_step = .true.
 
-    ! Print configuration summary to log file (stdout).
-
-    if (masterproc) call timemgr_print()
-
-    timemgr_set = .true.
-
   end subroutine timemgr_restart
 
   !=========================================================================================