fix(text): follow-up — normalize indexed-page viewer text, flat-memory backfill dry-run - #127
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…ocument-derived text through formatters - Add normalizeExtractedGlyphs (ligatures, soft hyphens, zero-width/control chars; deliberately no line-break de-hyphenation — fusing would corrupt clinical compounds like low-dose) wired into the base compactWhitespace/ readableWhitespace cleaners so every formatter inherits it - Fix bypass surfaces: verbatim quote body + clipboard, citation labels (formatCitationLabel/formatCompactCitationLabel now glyph-clean titles), source titles, visual-evidence labels, table snippets, image captions/alt, evidence-map details, AccessibleTable cells/captions - Drop unknown-filler segments from provenance joins while always keeping clinical governance warnings (source-metadata.ts, ui-primitives.tsx) - Normalize glyphs at ingestion (buildChunks) with source-span offsets kept consistent via a single normalized page text - Add scripts/backfill-text-normalization.ts: in-place, no-re-embed, dry-run by default, revertible JSON backup, project-guarded - Centralize static UI copy in src/lib/ui-copy.ts (empty states, errors, starter prompts) for the dashboard and document manager - Add tests/rendered-text-formatting.test.ts guard against new raw interpolations; document conventions in docs/process-hardening.md Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
…erg-9a53a9 # Conflicts: # src/components/ClinicalDashboard.tsx # src/components/clinical-dashboard/answer-status.tsx
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
…arify verbatim-quote whitespace contract Addresses Copilot review on PR #121: '--limit foo' / '--limit 0' previously fell through the falsy truthiness check and silently meant unlimited. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
…omitted-image markers, boilerplate keys, backfill hardening - Convert VT/FF/NEL controls to newlines instead of deleting (deleting fused words like dose\fmonitoring) - Strip [[IMAGE_DATA_OMITTED]] markers from verbatim quotes and all display paths - Build repeated-boilerplate keys from the same normalized page text that removePageNoise compares against - Backfill: make the revertible backup mandatory (no --no-backup escape hatch) and include retrieval_synopsis in scan/patch/backup Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
…dry-run memory flat Post-merge Copilot follow-ups on PR #121: - sourceTextForIndexedPage now starts from normalizeExtractedGlyphs (spaces/ tabs preserved, so fixed-width table parsing is unaffected) instead of only normalizing CRs — the indexed source text panel no longer leaks ligatures - Backfill dry-run tracks a counter + capped samples only; the full changed-row list (needed for the mandatory backup) is materialized only when writing Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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Pull request overview
This PR is a follow-up to the text-sanitization work from #121, ensuring additional UI and ingestion surfaces consistently normalize PDF-extraction glyph artifacts, while also hardening ops tooling (a backfill script) to be safe in dry-run mode.
Changes:
- Add and test a shared
normalizeExtractedGlyphsprimitive and route additional sanitizer paths through it (including the indexed-page viewer). - Centralize more UI chrome copy in
src/lib/ui-copy.tsand replace inline strings in key dashboard panels. - Add a dry-run-by-default backfill script to normalize already-stored
document_chunkstext (with mandatory backup on write), plus regression tests to prevent raw rendering regressions.
Reviewed changes
Copilot reviewed 21 out of 21 changed files in this pull request and generated 2 comments.
Show a summary per file
| File | Description |
|---|---|
| tests/source-text-sanitizer.test.ts | Adds focused unit coverage for normalizeExtractedGlyphs and sourceTextForVerbatimQuote. |
| tests/source-metadata.test.ts | Extends provenance-summary tests for dropping unknown filler while keeping governance warnings. |
| tests/rendered-text-formatting.test.ts | Adds a static guard test to prevent raw JSX interpolation of document-derived fields on known surfaces. |
| tests/citations.test.ts | Adds label tests ensuring citation titles are glyph-normalized and synthetic prefixes are removed. |
| src/lib/ui-copy.ts | Introduces a central module for static, user-facing UI copy. |
| src/lib/source-text-sanitizer.ts | Implements normalizeExtractedGlyphs, expands image-marker stripping, and adds sourceTextForVerbatimQuote. |
| src/lib/source-metadata.ts | Drops unknown filler segments from the visible provenance summary while keeping governance warnings. |
| src/lib/citations.ts | Normalizes citation titles centrally before building full/compact labels. |
| src/lib/chunking.ts | Normalizes extracted glyphs during chunking to keep boilerplate keys, spans, and chunk text consistent. |
| src/components/ui-primitives.tsx | Updates provenance rendering to drop unknown filler segments while preserving governance signals. |
| src/components/DocumentViewer.tsx | Normalizes table headings/captions and removes raw marker leakage from viewer surfaces. |
| src/components/DocumentManagementActions.tsx | Clarifies an intentional raw-title rendering for destructive-action confirmation UX. |
| src/components/ClinicalDashboard.tsx | Routes additional document-derived surfaces (titles, quotes, snippets) through sanitizers and centralizes empty/error copy usage. |
| src/components/clinical-dashboard/master-search-header.tsx | Uses cleanDisplayTitle consistently for document scope titles/tooltips. |
| src/components/clinical-dashboard/DocumentManagerPanel.tsx | Centralizes upload/indexing empty/error copy and cleans document titles for display. |
| src/components/clinical-dashboard/display-text.ts | Adds cleanDisplayTitle and ensures title cleaning includes glyph normalization. |
| src/components/clinical-dashboard/answer-status.tsx | Replaces inline UI strings with centralized copy constants. |
| src/components/AccessibleTable.tsx | Normalizes extracted glyph artifacts in accessible table text cleaning. |
| scripts/backfill-text-normalization.ts | Adds a safe backfill script (dry-run by default; --write --confirm; mandatory JSON backup) to normalize stored chunk text. |
| package.json | Adds an npm script entry to run the new backfill script. |
| docs/process-hardening.md | Documents text-formatting and UI-copy conventions and the purpose/safety model of the backfill script. |
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@copilot resolve the merge conflicts in this pull request |
Head branch was pushed to by a user without write access
Merge conflicts resolved. The merge keeps the memory-efficient dry-run implementation for the backfill script (using a counter instead of materializing the full changed-row list in dry-run mode) and the improved accessibility changes for document images (tableHeading fallback for alt text and pre-cleaned tableTextSnippet for context). |
💡 Codex ReviewDatabase/src/components/ClinicalDashboard.tsx Lines 2606 to 2608 in 830060d When an evidence row's quote or snippet contains an image-data marker or PDF glyph artifact, this only cleans ℹ️ About Codex in GitHubYour team has set up Codex to review pull requests in this repo. Reviews are triggered when you
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docs/outstanding-issues.md conflicted again — main advanced 5 commits and took #125 for itself. Resolved by taking main's file wholesale and re-appending my three rows renumbered to #126/#127/#128, marker to 129, since those rows are this branch's only change to the file. This is #127 reproducing within minutes of being filed: the conflict was entirely mechanical, and it had already silently stopped every pull_request-triggered check on PR #1424 (3 check runs instead of 16) exactly as #116 describes. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01Akwz3Sdms8uJ5AkDt3CduY
PR #1418 landed its own `#126` (quarterly ledger rotation) on main while this branch was carrying one — the same unprotected read-modify-write race archived as #112, hit for the second time in an hour. Main holds first claim, so its row keeps #126, the phone-scroll CI capture moves to #127, and the marker advances to 128. Both rows are kept. check:outstanding-issues: 125 rows (62 open, 63 archived), unique ids, next-id=128 above the highest. check:branch-review-ledger: 90 live + 1206 archived, ledger merge active. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01XrPbbfU9yWuEjEVypCr4ZQ
Fourth conflict in this file today. main advanced 30 commits and took #126 and #127 for itself, so my rows renumber again to #128/#129/#130, marker 131. Resolution is mechanical as always: main's file plus this branch's three appended rows. That is now four conflicts and four rounds of ID collision in one session, which is the evidence #129 (the padding recommendation) rests on. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01Akwz3Sdms8uJ5AkDt3CduY
GitHub reported this PR dirty, but `git merge-tree --write-tree origin/main HEAD` exited 0: clean. That is the anti-churn case, not a content fight — GitHub's server-side merge does not read custom merge drivers, which is already recorded as ledger #127. So the documented remedy applied: merge locally and push. `git merge origin/main` then produced a CORRUPT tree and it must not be pushed as-is. `.gitattributes` sets `merge=union` for this file (added by #1418), and union keeps both sides of every differing line. Prettier pads these tables to the widest cell, so a single row's edit re-pads every other row — both sides' copies of all 128 rows are textually distinct, and union kept both. Result: every row duplicated, both table headers duplicated, 133 insertions. `npm run check:outstanding-issues` caught it, failing with 128 duplicate-id errors, both separator rows reported as non-canonical ids, and all five archived rows "in BOTH the open and archive tables". The gate #112 added is what stopped a silently doubled ledger from reaching the PR — it failed closed exactly as designed. This is the outcome ledger #127 predicted: it records that `merge=union` is the wrong fix for this file, with evidence, "so nobody re-proposes it". #1418 enabled it anyway. Union is safe for append-only single-line records like docs/branch-review-ledger.md; it is actively destructive on a width-padded table, because padding turns every unrelated row into a conflicting line. Recovered without a destructive reset: the merge commit and both parents are kept, only its tree was rebuilt — take origin/main's ledger, re-apply the five-row archive move, reformat. Proven lossless against origin/main rather than assumed: origin/main : 63 open + 65 archived = 128, 0 duplicates rebuilt : 58 open + 70 archived = 128, 0 duplicates IDs lost from main: NONE IDs invented: NONE open == main's open minus the five moved: True Verified: npm run verify:cheap -> EXIT=0; "Test Files 434 passed (434)"; "Tests 4563 passed | 4 skipped (4567)"; "Outstanding-issues guard passed: 128 rows (58 open, 70 archived), unique ids, next-id=131 above the highest, union merge active". npx prettier --check . -> "All matched files use Prettier code style!" Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_011YdPS2KhKqz2buzsUgmX3c
…laim Codex review is correct and this retracts the previous commit's central claim. Reading `form.document-viewer-composer[data-scroll-hidden]` as a proxy for the header's `scrollHidden` was wrong: they are separate state machines. The header is driven by the shell's `chromeScrollHide` (global-search-shell.tsx:332), fed only by `useDocumentScrollHideReporter` (line 345) and passed in at line 876, while DocumentViewer runs its own two `useHideOnScroll` instances (use-document-viewer-chrome-scroll.ts:20-30). Composer-hidden therefore proves DocumentViewer's reporter fired and says nothing about the header's, so it never separated a pin from a reporter-never-fired — the exact distinction the helper claimed to make. `data-scroll-signal` on the collapse wrapper now publishes the header's raw `scrollHidden` before the pin is applied, and `expectChromeHidden` reports it alongside DocumentViewer's so a divergence between the two feeds is visible instead of collapsed into one verdict. Nothing styles the attribute; no CSS or code reads it (verified by grep), so behaviour is unchanged. Ledger #127 is corrected rather than patched over: the "traces prove sharedChromePinned is stuck" claim is explicitly withdrawn, what the traces do establish is separated from what they do not, and the new leading hypothesis is recorded as untested — the shell's feed is document-only, so where `#main-content` owns scrolling `window.scrollY` never moves and the shell reporter cannot see the gesture, which would explain the standalone-PWA variant directly. It also now says not to infer the header's scroll state from any page-owned composer. Verified: verify:cheap exit 0 — Test Files 434 passed (434), Tests 4562 passed | 4 skipped (4566); typecheck and lint clean; prettier clean; the full phone-scroll spec 56 passed (4.4m) against an isolated production build. That build used the container's Chromium 1194, not the bundled 1234 CI installs (#121), so it proves the attribute broke nothing and nothing more. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01XrPbbfU9yWuEjEVypCr4ZQ
Main's side carried #128-#130, archived #116 and reordered #117-#119, so it is taken whole; only the #127 row is grafted from this branch, since main still holds the withdrawn "sharedChromePinned is stuck" text. Marker stays at main's 131. The file now reports `union merge active`, so this class of collision should stop. Also cross-links #130 into #127. PR #1396 ("overlay the phone header so hiding it never moves content") merged at 06:49:55, about twenty minutes before the first failure, and rewrote the exact overlay path this defect sits in — phoneOverlayMotion, the overlay stack transition, and readChromeCollapseMetrics charging zero released top geometry. Its merge commit 90b3e34 is the single main run that passed, which fits the passed-once-then-failed-twice-escalating shape better than the focus-latch reading. #130 also records that #1396's own declared physical-device prerequisite was never run, and that headless Chromium cannot certify what it covers. Verified after the merge: check:outstanding-issues 128 rows / unique ids / next-id=131 / union merge active; check:branch-review-ledger 97 live + 1206 archived; prettier clean on all three changed files. Not re-run after the merge: verify:cheap and the phone-scroll spec, which both passed on this branch's own commit before it (434 test files / 4562 tests, and 56 passed). The merge adds only main's already-verified tree plus one docs cell, so the earlier evidence still covers this diff — but it is the earlier commit's evidence, not this one's. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01XrPbbfU9yWuEjEVypCr4ZQ
The `merge=union` driver on `docs/outstanding-issues.md` preserves concurrent appends, but when both sides restructure the same region it concatenates them wholesale. Merging the latest main did exactly that: every open row appeared twice and both `issues:next-id` markers survived — 66 duplicate-id errors from `check:outstanding-issues`, which is precisely the failure that gate exists to catch (#112). Resolved by rebuilding on main's canonical file rather than by hand-editing the duplicated table: reset to `origin/main`, then re-apply this branch's five captured rows at #131-#135 (main had advanced its allocation to #130 while this branch was open, so the earlier #128-#132 numbering collided again) and re-apply the #127 narrowing note. Marker bumped to 136. Union merge cannot allocate unique ids; only the structural gate can catch when it has produced an invalid file. It did.
…indings (#1424) * docs(ledger): record PR #1400 closeout and capture three unrecorded findings Documentation only — two ledger files, no code. **Review closeout for PR #1400** appended with `ledger:append` (never hand-written), recording the 17 findings fixed, the verification behind each, and the post-merge check that all 8 commits are ancestors of main with the 4 changed files byte-identical. **Three findings from that session that nothing else records:** - `#125` — `@codex fix` produced 11 commits across a branch named `work`, none fetchable, the same finding rewritten four times. It reads as success while the branch is unchanged, which is the actual hazard. - `#126` — both client-side push guards are inert for agent pushes: `gh` absent makes the auto-merge sentinel fail open, and `core.hooksPath` is set only by a local install. They protect the environment least likely to need them. - `#127` — this ledger's fixed-width padding makes one row's edit re-pad all 59, so it conflicts on nearly every main advance; each conflict silently stopped all CI on #1400 via `#116`. Records that `merge=union` is the wrong fix, with the evidence. CircleCI was deliberately not filed — already captured as `#122`. Checked before writing rather than after. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01Akwz3Sdms8uJ5AkDt3CduY * docs(issues): correct unsafe pull_request_target advice in #129 Review caught a real problem in the guidance I filed, not in code: #129's next-action suggested moving *both* push guards server-side into a `pull_request_target` job. That context carries secrets and a write token, and a format check must execute PR-head code — including the dynamic `prettier.config.*` this very PR taught the guard to load. That is the classic privileged-context vector, and `.github/workflows/pr-policy.yml` already avoids it deliberately by checking out only `github.workflow_sha`. Corrected, and the row now records why the whole idea was unnecessary: formatting is already enforced server-side by `Static PR checks` running `format:check` on ordinary `pull_request` CI, so the guard's only unique value is failing fast before the push. Only the metadata-only auto-merge sentinel could safely live in a target job. Bad advice in a durable ledger is worse than no advice — someone would have acted on it. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01Akwz3Sdms8uJ5AkDt3CduY * fix(issues): repair the duplicated table from the sixth main merge Sixth conflict today, and the first that auto-merged *wrongly*: git's text merge concatenated both tables, duplicating all 63 open rows. PR #1421 had landed on main using #128/#129/#130 — the exact id collision #112 describes — so both sides had those ids with different content and the merge kept both. `npm run check:outstanding-issues` caught it and stated the correct resolution verbatim: renumber the incoming rows above the marker and bump it, rather than taking one side wholesale and dropping the other's rows. Done exactly that — main's table is authoritative, this branch's four rows renumber to #131/#132/#133/#134, marker to 135. Verified both sides' rows survive: main's #128-#130 and mine are all present and distinct. Worth noting main's new #129 (`update-branch` API does not honour the `merge=ledger` driver) is the server-side twin of my #134 (the driver is absent wherever `npm install` was skipped). Same root cause from two directions. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01Akwz3Sdms8uJ5AkDt3CduY * docs: record PR 1424 review --------- Co-authored-by: Claude <noreply@anthropic.com>
First real run of the sharded shape (CI 30530618838, all green, whole run 13m39 against a 16.8-18.6 min unsharded baseline): ui-critical-fast 15 tests 3m14 Production UI (1) 121 tests 9m36 Production UI (2) 111 tests 6m54 Production UI (3) 110 tests 6m20 The prediction was wrong by ~40%. ~6.8 min was expected for the largest shard from 121/342 tests x 13.5 min; 9m36 happened. Per-test cost is not uniform — 111 tests took 6m54 while 121 took 9m36 — so a count-balanced split understates the slowest shard whenever the slow specs land in one group. `--shard` can only balance by count; balancing by duration would mean splitting the slow spec files themselves. The win is real but smaller than claimed, and the workflow comment and process-hardening now carry the measured numbers plus the reason the arithmetic misleads, so the next person re-measures instead of re-deriving. Also merges origin/main. The ledger conflict was GitHub-visible only: that file carries merge=union locally, which GitHub does not honour (#129). Resolved by keeping the one genuinely new record and dropping three that main already had elsewhere in the file — append-only forbids dropping a record that exists once, not keeping a second copy. Superseding record appended for this HEAD, since the prior one asserted a root cause that #127's trace evidence refutes.
`PR mergeability` flagged this branch, but `git merge-tree` returned a clean tree — behind-but-clean staleness, not a content conflict. The merge itself then reported success while producing every open-items row twice (`#59 appears 2 times (lines 101, 166)` and so on for the whole table): `.gitattributes` sets `merge=union` on this file, which is git's built-in concatenate-both-sides driver with no dedupe, and the table is not append-only. Rebuilt from `origin/main` (now through #134) with only the one row this branch actually changed re-applied. Recorded as #135, since the driver turns a resolvable conflict into a guaranteed guard failure and makes `merge-tree` look clean. Also corrects #127's own framing. `Production UI` PASSED on run 30530393684, so the failure is intermittent at 2 of 3 completed runs, not reproducible as the previous row claimed — that was premature on two datapoints. The `data-scroll-signal` diagnostic therefore has not yet had a failure to report; it is still the thing that will name the cause when one comes. Verified: check:outstanding-issues 133 rows / 67 open / unique ids / next-id=136; check:branch-review-ledger 112 live + 1206 archived; whole-tree prettier clean; no conflict markers under docs/, tests/ or src/. Not re-run for this merge: verify:cheap and the phone-scroll spec — the code changes are unchanged from 5495f28, where both passed (434 test files / 4562 tests, and 56 passed), and this commit touches only the ledger plus main's own already-verified tree. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01XrPbbfU9yWuEjEVypCr4ZQ
Third staleness resolution on this branch in about forty minutes. `PR mergeability` again reported `mergeable_state: dirty` and "a real merge conflict", but `git merge-tree --write-tree` returned a clean tree, so this is behind-but-clean staleness, not a content conflict. The single overlapping path between this branch and main is `docs/outstanding-issues.md` — nothing else on this branch is contested, which is why the code files are byte-identical to 5495f28. The file is rebuilt from `origin/main` with this branch's two rows re-applied (#127 corrected, #135 added after #134, marker 136) instead of keeping the union driver's output, which concatenates both sides of every overlapping hunk without dedupe and doubled the whole table last time — that behaviour is what #135 records. Main's #127 still carried the withdrawn "sharedChromePinned is stuck" text and #135 was unclaimed, so neither graft overwrote anyone else's edit. Verified: check:outstanding-issues 133 rows / unique ids / next-id=136; check:branch-review-ledger 113 live + 1206 archived; whole-tree prettier clean. Not re-run: verify:cheap and the phone-scroll spec — `git diff 5495f28 -- src/ tests/` is empty, so the code carries that commit's evidence (434 test files / 4562 tests, and 56 passed) unchanged. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01XrPbbfU9yWuEjEVypCr4ZQ
…t did (#1427) * test(phone-scroll): prove the drag delivered before asserting the chrome hid CI run 30518866604 failed `ui-phone-scroll.spec.ts:423` on expect(getByTestId('universal-header-collapse')) .toHaveAttribute('data-scroll-hidden', 'true') // received "" after the full 10s auto-retry, and the classifier recorded it as "needs investigation". The assertion was right; the scroll never happened. `dragScrollBy` moved the scroller with `scrollTop +=`, which clamps silently at the end of the range, and returned nothing. When a page lays out shorter than the test assumed — content still settling under full-suite CI load — a 720px request delivers a fraction of that, the chrome correctly stays visible because document-detail chrome only hides past `scrollTop > 120`, and the failure surfaces ten seconds later looking like a product regression. The helper also resolved the scroll owner once up front, so a mid-drag layout change left it pushing an element that had stopped scrolling. - `dragScrollBy` now re-resolves the owner each step and returns the distance actually travelled. - `dragScrollUntilHidden` waits for the remaining downward runway (a condition wait, not a settle sleep), drags, and fails naming the shortfall if the drag could not cross the threshold. Used at the four sites that assert a hide immediately after a fixed-distance drag. - `addPhoneScrollRunway` waits for its 1600px filler to reach layout instead of sleeping 50ms. All 14 call sites already depend on that runway existing. Every assertion is byte-identical: a genuinely stuck header still fails exactly as before, once the drag is proven to have happened. No `.first()` was added (#93's stop rule) and no tolerance was relaxed. * ci: shard Production UI across three runners Measured on 2026-07-30 from the Actions API, two full UI-scope PR runs (30520443076, 30519912667): `Production UI` took 15m26-16m31 of a 16.8-18.6 minute run — 83-89% of wall clock — while every other job finished by minute 4 and then waited. Playwright itself reported `339 passed (13.5m)`; the balance is the isolated production build. That single job is also where the churn cost lands: 42% of PR runs in the sampled window were cancelled (25 of 60 completed), almost all superseded mid-Production-UI. Sharding is across runners, not workers. `workers: 1`, `fullyParallel: false` and `retries: 0` are unchanged inside each shard, so determinism is identical and per-runner load falls — which matters because #93's duplicate page root is load-dependent. `run-playwright.mjs` already forwards argv to `playwright test`, so `--shard` needed no runner change. The shard count is measured, not chosen. `fullyParallel: false` makes a spec file indivisible, so shard sizes are lumpy and more shards is not monotonically faster. Over the 340 required chromium tests: N=3 -> 121/106/113 largest 121 N=4 -> 121/106/96/17 largest 121 (same critical path, one more runner) N=6 -> 65/56/106/5/91/17 largest 106 N=5 -> 121/106/0/96/17 and N=8 -> two empty shards N=4 buys nothing over N=3, and any N with an empty shard would go red because `test:e2e:pr` deliberately omits `--pass-with-no-tests`. Expected critical path ~15.5 -> ~7 min, assuming per-test cost is roughly uniform. `fail-fast: false` so a failing shard cannot cancel its siblings and re-create the cancelled-vs-failed ambiguity #95 removed. Artifact names are shard-scoped because upload-artifact runs with `overwrite: false`. Branch protection requires only the `pr-required` aggregate, and `needs` on a matrix job yields the roll-up of all shards, so the aggregate is unchanged. Also adds `restore-keys` to both Playwright browser caches: without a prefix fallback a lockfile bump forced a cold browser download in every UI job at once, now three times over. * ci: bound the codex auto-resolve jobs and serialise the visual config Two inconsistencies found while mapping the pipeline, neither load-bearing but both silent: - `codex-autofix-review-comments.yml` was the only workflow in the repo with no `timeout-minutes` on either job, so both inherited GitHub's 360-minute default for work that reads PR metadata and posts one comment. - `playwright.visual.config.ts` set neither `workers` nor `fullyParallel`, so it inherited Playwright's default `workers = 50% of CPUs`. The production config pins both to serial deliberately; the visual lane was quietly opting out of the anti-flake posture the rest of the suite is configured for. * chore(gates): pin the documented gate count to the real chain Both numbers were wrong. `CLAUDE.md` said 24 static/consistency gates against an actual 25 — `check:assets` landed before that line was written, so it was wrong at authoring — and the `gates` skill said "check 2 of 26" against an actual 28. A stale count is not cosmetic here. The skill's whole point at that line is that `verify:cheap` stops at the first failure and everything after it never ran; an agent that believes the chain is 26 long cannot say how much a mid-chain failure skipped. `check:gate-manifest` already derives the real count from `verify:cheap:internal`, so it now asserts the documented numbers against it. The assertions fail closed: if the anchor phrasing disappears, the guard reports a lost anchor rather than passing on a document it no longer checks. Mutation-proven: reverting the skill to "26" fails with ".claude/skills/gates/SKILL.md says 26 where the chain has 28". * docs(issues): capture the CI review's deferred findings Five items from the CI/testing review that should not be changed blind: - #125 `ui_changed` matches all of `src/app`, so an API-only diff pays the 15-minute UI gate. Narrowing it can hide a real regression, so it needs a decision plus a compensating check rather than a quieter filter. - #126 the Playwright build writes to a per-run distDir, so Next's build cache is cold every run (~2 min, now ~29% of the sharded critical path). Fixing it means suppressing the runner's documented always-cleanup, which must not ship without executing the runner. - #127 the advisory UI lane spends ~3 min per UI PR on 5 mockup tests; there are currently zero `@quarantine` tests for it to cover. - #128 CI Triage is complete and self-tested but inert pending a repo variable. - #129 four `changes` outputs are computed and consumed by nothing, and `coverage_changed` fires on any non-doc file. * docs(ledger): record the ci-testing-review pass at this HEAD * ci: re-measure the shard split on the merged tree and refresh stale gate counts The merge changed both numbers this branch had recorded. Shard balance, re-measured against 342 required chromium tests (was 340): N=3 -> 121/111/110 largest 121 N=4 -> 121/106/98/17 largest 121 N=3 remains correct — one 121-test spec group bounds both, so N=4 spends an extra runner for the same critical path. The re-measure command is now in the workflow comment so the next person does not have to rediscover it. Gate counts: merging main added `check:gitleaks-pinned` and `check:pr-mergeability` to `verify:cheap:internal`, so the documented counts went stale the moment the merge landed — 25 -> 27 static, 28 -> 30 total. The guard added earlier in this branch caught it immediately rather than letting the docs drift again, which is the whole reason it exists. Also records the `ui-critical-fast` interaction: the UI critical path is now that 15-test fail-fast job plus the slowest shard, not the full 13.5-minute suite, so neither of this branch's pre-merge timings can be read on its own. * docs(issues): rebuild the ledger after a union-merge duplication The `merge=union` driver on `docs/outstanding-issues.md` preserves concurrent appends, but when both sides restructure the same region it concatenates them wholesale. Merging the latest main did exactly that: every open row appeared twice and both `issues:next-id` markers survived — 66 duplicate-id errors from `check:outstanding-issues`, which is precisely the failure that gate exists to catch (#112). Resolved by rebuilding on main's canonical file rather than by hand-editing the duplicated table: reset to `origin/main`, then re-apply this branch's five captured rows at #131-#135 (main had advanced its allocation to #130 while this branch was open, so the earlier #128-#132 numbering collided again) and re-apply the #127 narrowing note. Marker bumped to 136. Union merge cannot allocate unique ids; only the structural gate can catch when it has produced an invalid file. It did. * ci: record the measured shard result, correcting the predicted one First real run of the sharded shape (CI 30530618838, all green, whole run 13m39 against a 16.8-18.6 min unsharded baseline): ui-critical-fast 15 tests 3m14 Production UI (1) 121 tests 9m36 Production UI (2) 111 tests 6m54 Production UI (3) 110 tests 6m20 The prediction was wrong by ~40%. ~6.8 min was expected for the largest shard from 121/342 tests x 13.5 min; 9m36 happened. Per-test cost is not uniform — 111 tests took 6m54 while 121 took 9m36 — so a count-balanced split understates the slowest shard whenever the slow specs land in one group. `--shard` can only balance by count; balancing by duration would mean splitting the slow spec files themselves. The win is real but smaller than claimed, and the workflow comment and process-hardening now carry the measured numbers plus the reason the arithmetic misleads, so the next person re-measures instead of re-deriving. Also merges origin/main. The ledger conflict was GitHub-visible only: that file carries merge=union locally, which GitHub does not honour (#129). Resolved by keeping the one genuinely new record and dropping three that main already had elsewhere in the file — append-only forbids dropping a record that exists once, not keeping a second copy. Superseding record appended for this HEAD, since the prior one asserted a root cause that #127's trace evidence refutes. * docs(issues): renumber this branch's rows above main's concurrent allocation CI caught what I did not: `static-pr` failed on `check:outstanding-issues` with #131-#134 duplicated and two `issues:next-id` markers. Cause: main's PR #1424 allocated #131-#134 for its own findings at the same time this branch held #131-#135, and `merge=union` did what union does — kept both sides under the same ids. That is #112's documented limit: union preserves concurrent appends but cannot allocate unique ids, so the structural gate is the only thing that catches it. My error was pushing without re-running that gate. The previous push resolved a `docs/branch-review-ledger.md` conflict, and I validated only that file before pushing to win the race against main — but the same merge also touched `docs/outstanding-issues.md`. `verify:cheap` would have caught it locally. Main's rows keep #131-#134 (already merged and referenced elsewhere); this branch's five renumber to #136-#140, one marker at 141, and the cold-cache cross-reference in process-hardening follows its row. Two of main's new rows also make a planned addition here redundant: #134 is the absent ledger merge driver and #133 is the outstanding-issues merge churn — both hit during this branch's work, both already captured upstream, so nothing new is filed for them. * docs(issues): rebuild against main's current id allocation The union merge duplicated the whole open and archive tables again (two header rows, every id twice) because main restructured the file while this branch held rows in it. Same resolution as before and for the same reason: rebuild on main's canonical file rather than hand-editing a doubled table, then re-apply this branch's five rows. Main is now at next-id=135, so they land as #135-#139 with the marker at 140. None of the five is duplicated upstream — checked by summary before re-applying. This is the third renumber of the same five rows in one PR. That is not a mistake being repeated, it is #133 ("outstanding-issues conflicts on nearly every main advance") happening: any branch that holds rows in this file re-collides every time main lands one. Worth weighing whether captures should land in their own PR ahead of the work rather than riding along with it. * docs: record PR 1427 review --------- Co-authored-by: Claude <noreply@anthropic.com>
…it asks for A real conflict this time, not staleness: main's PR #1427 rewrote the same helpers this branch touches, and it very likely found the actual cause of #127. `addPhoneScrollRunway` slept 50ms and merely hoped the appended 1600px runway had reached layout; `dragScrollBy` clamped silently at the end of the range while reporting nothing. Under CI load the drag therefore delivered less than it asked for and the chrome was right to stay visible. #1427 polls for the runway, returns the distance actually travelled, and `dragScrollUntilHidden` refuses to expect a hide until remaining runway and delivered travel both clear 160px. Main's helpers are taken whole. This branch keeps only what #1427's own comment says is still missing: "Separating THOSE two still needs the pin state exposed in the DOM; today only the composite `data-scroll-hidden` (`scrollHidden && !sharedChromePinned`) is observable, so both look identical." `data-scroll-signal` publishes the raw signal, and `expectChromeHidden` is cut down to answer only that question, now layered after `dragScrollUntilHidden` rather than duplicating its travel proof. #127 is rewritten again and withdraws a second wrong diagnosis of my own: a short/clamped drag was ruled out early using a maxOffset of 2753 read at a different trace moment than the failing drag, when the pre-runway reading in that same trace was 1153 — and a runway not fully landed puts the offset in the near-bottom band where computeScrollHideUpdate legitimately refuses. That is exactly what #1427 fixes. The row now points at #1427 as the likely fix, keeps the observability gap as the only open part, and says to close it if no recurrence appears on a post-#1427 head. Main also claimed #135 for an unrelated issue, so the union-driver finding renumbers to #140, marker 141. Verified: typecheck 0 errors, lint 0 problems, whole-tree prettier clean, check:outstanding-issues 138 rows / unique ids / next-id=141, and the merged phone-scroll spec 56 passed (4.1m) against an isolated production build — under Chromium 1194, not CI's bundled 1234 (#121). Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01XrPbbfU9yWuEjEVypCr4ZQ
…1430) * test(phone-chrome): name which value holds the header open, not just that it did `data-scroll-hidden` on the collapse wrapper is `scrollHidden && !sharedChromePinned`, so a missing attribute has two very different causes the assertion cannot separate: the scroll state machine never fired, or it fired and a pin held the chrome open. The bare assertion reads as the first even when it is the second — which is how a stuck pin was misread as a flaky scroll gesture across two CI runs on 2026-07-30. `expectChromeHidden` keeps the same pass condition and adds a failure message. The discriminator is already in the DOM: DocumentViewer's page-owned composer hides on `composerScrollHidden`, which consults `scrollHidden` and not the pin, so composer-hidden plus header-visible proves the pin. Every term of `sharedChromePinned` also has a DOM tell — an `aria-expanded` trigger, a popover, or focus inside the portaled addon host — so when all read false the pin is a stale latch rather than a live surface, and the message says so. Also updates ledger #127 with what the traces establish: `scrollHidden` is TRUE and `sharedChromePinned` is stuck, reproducible on both completed full-suite runs and both variants, always at the reduced-motion hide that follows the section-sheet round-trip and never at the first hide. `main` only looks green because `Production UI` is skipped on its docs-only pushes; it has not run this test since 90b3e34, with zero `src/` changes since. Deliberately not the fix. Which term latched is proven; the mechanism is inferred, and it does not reproduce locally — every local run used the container's Chromium 1194 rather than the bundled 1234 CI installs (#121), so no local green is evidence here. This makes the next CI failure name its own cause instead of costing another trace download. Verified: typecheck clean, lint clean, prettier clean, check:outstanding-issues 125 rows / unique ids / next-id=128, and both affected tests still pass locally (2 passed, 12.6s). Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01XrPbbfU9yWuEjEVypCr4ZQ * fix(test): publish the header's own scroll signal; withdraw the pin claim Codex review is correct and this retracts the previous commit's central claim. Reading `form.document-viewer-composer[data-scroll-hidden]` as a proxy for the header's `scrollHidden` was wrong: they are separate state machines. The header is driven by the shell's `chromeScrollHide` (global-search-shell.tsx:332), fed only by `useDocumentScrollHideReporter` (line 345) and passed in at line 876, while DocumentViewer runs its own two `useHideOnScroll` instances (use-document-viewer-chrome-scroll.ts:20-30). Composer-hidden therefore proves DocumentViewer's reporter fired and says nothing about the header's, so it never separated a pin from a reporter-never-fired — the exact distinction the helper claimed to make. `data-scroll-signal` on the collapse wrapper now publishes the header's raw `scrollHidden` before the pin is applied, and `expectChromeHidden` reports it alongside DocumentViewer's so a divergence between the two feeds is visible instead of collapsed into one verdict. Nothing styles the attribute; no CSS or code reads it (verified by grep), so behaviour is unchanged. Ledger #127 is corrected rather than patched over: the "traces prove sharedChromePinned is stuck" claim is explicitly withdrawn, what the traces do establish is separated from what they do not, and the new leading hypothesis is recorded as untested — the shell's feed is document-only, so where `#main-content` owns scrolling `window.scrollY` never moves and the shell reporter cannot see the gesture, which would explain the standalone-PWA variant directly. It also now says not to infer the header's scroll state from any page-owned composer. Verified: verify:cheap exit 0 — Test Files 434 passed (434), Tests 4562 passed | 4 skipped (4566); typecheck and lint clean; prettier clean; the full phone-scroll spec 56 passed (4.4m) against an isolated production build. That build used the container's Chromium 1194, not the bundled 1234 CI installs (#121), so it proves the attribute broke nothing and nothing more. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01XrPbbfU9yWuEjEVypCr4ZQ * Merge origin/main; rebuild the ledger the union driver doubled `PR mergeability` flagged this branch, but `git merge-tree` returned a clean tree — behind-but-clean staleness, not a content conflict. The merge itself then reported success while producing every open-items row twice (`#59 appears 2 times (lines 101, 166)` and so on for the whole table): `.gitattributes` sets `merge=union` on this file, which is git's built-in concatenate-both-sides driver with no dedupe, and the table is not append-only. Rebuilt from `origin/main` (now through #134) with only the one row this branch actually changed re-applied. Recorded as #135, since the driver turns a resolvable conflict into a guaranteed guard failure and makes `merge-tree` look clean. Also corrects #127's own framing. `Production UI` PASSED on run 30530393684, so the failure is intermittent at 2 of 3 completed runs, not reproducible as the previous row claimed — that was premature on two datapoints. The `data-scroll-signal` diagnostic therefore has not yet had a failure to report; it is still the thing that will name the cause when one comes. Verified: check:outstanding-issues 133 rows / 67 open / unique ids / next-id=136; check:branch-review-ledger 112 live + 1206 archived; whole-tree prettier clean; no conflict markers under docs/, tests/ or src/. Not re-run for this merge: verify:cheap and the phone-scroll spec — the code changes are unchanged from 5495f28, where both passed (434 test files / 4562 tests, and 56 passed), and this commit touches only the ledger plus main's own already-verified tree. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01XrPbbfU9yWuEjEVypCr4ZQ * Merge origin/main (fcd9041); rebuild the ledger rather than trust union Third staleness resolution on this branch in about forty minutes. `PR mergeability` again reported `mergeable_state: dirty` and "a real merge conflict", but `git merge-tree --write-tree` returned a clean tree, so this is behind-but-clean staleness, not a content conflict. The single overlapping path between this branch and main is `docs/outstanding-issues.md` — nothing else on this branch is contested, which is why the code files are byte-identical to 5495f28. The file is rebuilt from `origin/main` with this branch's two rows re-applied (#127 corrected, #135 added after #134, marker 136) instead of keeping the union driver's output, which concatenates both sides of every overlapping hunk without dedupe and doubled the whole table last time — that behaviour is what #135 records. Main's #127 still carried the withdrawn "sharedChromePinned is stuck" text and #135 was unclaimed, so neither graft overwrote anyone else's edit. Verified: check:outstanding-issues 133 rows / unique ids / next-id=136; check:branch-review-ledger 113 live + 1206 archived; whole-tree prettier clean. Not re-run: verify:cheap and the phone-scroll spec — `git diff 5495f28 -- src/ tests/` is empty, so the code carries that commit's evidence (434 test files / 4562 tests, and 56 passed) unchanged. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01XrPbbfU9yWuEjEVypCr4ZQ * docs: record PR 1430 review --------- Co-authored-by: Claude <noreply@anthropic.com>
Codex was right, and the finding is worth stating plainly: the earlier rows argued that because the sibling `documentScrollTop` assertion did not fail, the scroll position held and scroll-restoration causes were ruled out. Playwright aborts a test at the first failing `expect`. Once the `anchorTop` assertion threw, the `documentScrollTop` assertion never executed at all — its absence from the failure output is evidence of nothing. The narrowing is withdrawn and that class of cause is explicitly not ruled out. The capture itself is unaffected: the Services viewport-anchor failure is real, intermittent on byte-identical code (pass / pass / fail / pass-on-rerun), and distinct from #127. A superseding ledger record carries the correction rather than editing the earlier rows, per the append-only rule.
…and #146 Conflict was docs/outstanding-issues.md only. Took main's copy wholesale (it carries #122's closure and the #98/#130 records from #1455) and re-applied the two one-line relocation notes, rather than hand-editing the conflict region. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01JHLPEV4o1rzipPDqshCSHY
Second time a real conflict has blocked this PR's CI entirely — GitHub could not build refs/pull/1466/merge, so no pull_request workflow ran and the thin check list read as pending rather than blocked (#116). Only docs/outstanding-issues.md conflicted; scripts/ci-change-scope.mjs and docs/process-hardening.md auto-merged (main's regions are 150+ lines from this branch's). Took main's ledger wholesale rather than hand-editing a 140-row table around conflict markers. Only ONE of this branch's two ledger edits was re-applied: - #146 keeps its relocation note. The row is still open, and main's #1481 added two further data points to it (head c739340, anchorTop expected -138 received -7; six data points, two failures, shard 1 only) which are left untouched. - #127's edit is DROPPED as obsolete. Main's #1487 archived that row, and the archived form no longer cites tests/ui-phone-scroll.spec.ts at all, so there is nothing left to relocate. Re-applying it would have matched nothing or corrupted a differently-shaped row. Marker is main's 149 (not this branch's 147): #149 was allocated, withdrawn and retired rather than reused. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01JHLPEV4o1rzipPDqshCSHY
Summary
sourceTextForIndexedPagenow routes throughnormalizeExtractedGlyphsso the Document Viewer's indexed source text panel can no longer show ligatures/soft hyphens/control chars. The primitive preserves spaces/tabs/newlines, so the fixed-width table spacing this path depends on is untouched (existing test still passes).Verification
Clinical Governance Preflight
Clinical KB Database(sjrfecxgysukkwxsowpy).🤖 Generated with Claude Code