NAMESPACE

# Generated by roxygen2: do not edit by hand

export(ECDF)
export(MAplot)
export(MAvalues)
export(barplotSamplesMeasuredMissing)
export(batchCorrectionAssay)
export(createBoxplot)
export(createDfFeature)
export(cv)
export(cvFeaturePlot)
export(dimensionReduction)
export(dimensionReductionPlot)
export(distSample)
export(distShiny)
export(driftPlot)
export(explVar)
export(extractComb)
export(featurePlot)
export(histFeature)
export(histFeatureCategory)
export(hist_sample)
export(hist_sample_num)
export(hoeffDPlot)
export(hoeffDValues)
export(imputeAssay)
export(measuredCategory)
export(mosaic)
export(normalizeAssay)
export(permuteExplVar)
export(plotCV)
export(plotPCALoadings)
export(plotPCAVar)
export(plotPCAVarPvalue)
export(samplesMeasuredMissing)
export(shinyQC)
export(sumDistSample)
export(tblPCALoadings)
export(transformAssay)
export(upsetCategory)
export(volcanoPlot)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(ComplexHeatmap,comb_name)
importFrom(ComplexHeatmap,draw)
importFrom(ComplexHeatmap,extract_comb)
importFrom(ComplexHeatmap,make_comb_mat)
importFrom(DT,DTOutput)
importFrom(DT,renderDT)
importFrom(ExperimentHub,ExperimentHub)
importFrom(Hmisc,hoeffd)
importFrom(MASS,isoMDS)
importFrom(Rtsne,Rtsne)
importFrom(SummarizedExperiment,'assay<-')
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,`metadata<-`)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(UpSetR,upset)
importFrom(dplyr,across)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,starts_with)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_hex)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,position_stack)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_brewer)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,stat_ecdf)
importFrom(ggplot2,sym)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(grDevices,dev.off)
importFrom(grDevices,hcl.colors)
importFrom(grDevices,pdf)
importFrom(htmlwidgets,saveWidget)
importFrom(impute,impute.knn)
importFrom(imputeLCMD,impute.MinDet)
importFrom(imputeLCMD,impute.MinProb)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,normalizeQuantiles)
importFrom(limma,removeBatchEffect)
importFrom(limma,topTable)
importFrom(methods,formalArgs)
importFrom(methods,is)
importFrom(pcaMethods,completeObs)
importFrom(pcaMethods,pca)
importFrom(plotly,ggplotly)
importFrom(plotly,partial_bundle)
importFrom(plotly,plotlyOutput)
importFrom(plotly,renderPlotly)
importFrom(plotly,style)
importFrom(proDA,proDA)
importFrom(proDA,test_diff)
importFrom(rlang,":=")
importFrom(rlang,.data)
importFrom(rmarkdown,render)
importFrom(shiny,HTML)
importFrom(shiny,NS)
importFrom(shiny,actionButton)
importFrom(shiny,bindCache)
importFrom(shiny,br)
importFrom(shiny,checkboxInput)
importFrom(shiny,column)
importFrom(shiny,conditionalPanel)
importFrom(shiny,div)
importFrom(shiny,downloadButton)
importFrom(shiny,downloadHandler)
importFrom(shiny,fileInput)
importFrom(shiny,fluidRow)
importFrom(shiny,insertTab)
importFrom(shiny,isolate)
importFrom(shiny,modalDialog)
importFrom(shiny,moduleServer)
importFrom(shiny,observe)
importFrom(shiny,observeEvent)
importFrom(shiny,outputOptions)
importFrom(shiny,plotOutput)
importFrom(shiny,radioButtons)
importFrom(shiny,reactive)
importFrom(shiny,reactiveValues)
importFrom(shiny,reactiveValuesToList)
importFrom(shiny,renderPlot)
importFrom(shiny,renderText)
importFrom(shiny,renderUI)
importFrom(shiny,req)
importFrom(shiny,runApp)
importFrom(shiny,selectInput)
importFrom(shiny,selectizeInput)
importFrom(shiny,shinyUI)
importFrom(shiny,showModal)
importFrom(shiny,showNotification)
importFrom(shiny,sliderInput)
importFrom(shiny,strong)
importFrom(shiny,tabPanel)
importFrom(shiny,tabsetPanel)
importFrom(shiny,tagList)
importFrom(shiny,tags)
importFrom(shiny,textInput)
importFrom(shiny,textOutput)
importFrom(shiny,uiOutput)
importFrom(shiny,updateCheckboxGroupInput)
importFrom(shiny,updateCheckboxInput)
importFrom(shiny,updateSelectInput)
importFrom(shiny,updateSelectizeInput)
importFrom(shiny,updateSliderInput)
importFrom(shiny,verbatimTextOutput)
importFrom(shiny,withProgress)
importFrom(shinydashboard,box)
importFrom(shinydashboard,dashboardHeader)
importFrom(shinydashboard,dashboardPage)
importFrom(shinydashboard,dashboardSidebar)
importFrom(shinydashboard,tabBox)
importFrom(shinyhelper,helper)
importFrom(shinyhelper,observe_helpers)
importFrom(shinyjs,hidden)
importFrom(shinyjs,hide)
importFrom(shinyjs,show)
importFrom(shinyjs,useShinyjs)
importFrom(stats,as.dist)
importFrom(stats,as.formula)
importFrom(stats,cmdscale)
importFrom(stats,dist)
importFrom(stats,formula)
importFrom(stats,ks.test)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(sva,ComBat)
importFrom(tibble,add_column)
importFrom(tibble,as_tibble)
importFrom(tibble,rownames_to_column)
importFrom(tibble,tibble)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(umap,umap)
importFrom(vsn,meanSdPlot)
importFrom(vsn,vsn2)