From 04c78ed693ee3f16980c9bfe3bf22221cc92e021 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 6 Apr 2026 17:55:56 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/biomejs/pre-commit: v2.4.9 → v2.4.10](https://github.com/biomejs/pre-commit/compare/v2.4.9...v2.4.10)
- [github.com/tox-dev/pyproject-fmt: v2.20.0 → v2.21.0](https://github.com/tox-dev/pyproject-fmt/compare/v2.20.0...v2.21.0)
- [github.com/astral-sh/ruff-pre-commit: v0.15.8 → v0.15.9](https://github.com/astral-sh/ruff-pre-commit/compare/v0.15.8...v0.15.9)
- [github.com/pre-commit/mirrors-mypy: v1.19.1 → v1.20.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.19.1...v1.20.0)
---
 .pre-commit-config.yaml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 63edd8fa..75dab4b6 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -7,16 +7,16 @@ default_stages:
 minimum_pre_commit_version: 2.16.0
 repos:
   - repo: https://github.com/biomejs/pre-commit
-    rev: v2.4.9
+    rev: v2.4.10
     hooks:
       - id: biome-format
         exclude: ^\.cruft\.json$ # inconsistent indentation with cruft
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: v2.20.0
+    rev: v2.21.0
     hooks:
       - id: pyproject-fmt
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.8
+    rev: v0.15.9
     hooks:
       - id: ruff-check
         types_or: [python, pyi, jupyter]
@@ -36,7 +36,7 @@ repos:
       - id: check-merge-conflict
         args: [--assume-in-merge]
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.19.1
+    rev: v1.20.0
     hooks:
       - id: mypy
         additional_dependencies: [numpy, types-requests]

From 4ad718b3cae8161898d3d8faaba4846a5a6400be Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 6 Apr 2026 18:19:17 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 pyproject.toml | 48 ++++++++++++++++++++++++------------------------
 1 file changed, 24 insertions(+), 24 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 773f63aa..bf21ab7b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -85,6 +85,30 @@ envs.hatch-test.scripts.cov-report = [ "coverage report", "coverage xml -o cover
 metadata.allow-direct-references = true
 version.source = "vcs"
 
+[tool.pixi]
+workspace.channels = [ "conda-forge" ]
+workspace.platforms = [ "linux-64", "osx-arm64" ]
+dependencies.python = ">=3.11"
+pypi-dependencies.spatialdata-plot = { path = ".", editable = true }
+tasks.format = "ruff format ."
+tasks.kernel-install = 'python -m ipykernel install --user --name pixi-dev --display-name "sdata-plot (dev)"'
+tasks.lab = "jupyter lab"
+tasks.lint = "ruff check ."
+tasks.pre-commit-install = "pre-commit install"
+tasks.pre-commit-run = "pre-commit run --all-files"
+tasks.test = "pytest -v --color=yes --tb=short --durations=10"
+# for gh-actions
+feature.py311.dependencies.python = "3.11.*"
+feature.py313.dependencies.python = "3.13.*"
+# 3.13 lane
+environments.default = { features = [ "py313" ], solve-group = "py313" }
+# 3.11 lane (for gh-actions)
+environments.dev-py311 = { features = [ "dev", "test", "py311" ], solve-group = "py311" }
+environments.dev-py313 = { features = [ "dev", "test", "py313" ], solve-group = "py313" }
+environments.docs-py311 = { features = [ "doc", "py311" ], solve-group = "py311" }
+environments.docs-py313 = { features = [ "doc", "py313" ], solve-group = "py313" }
+environments.test-py313 = { features = [ "test", "py313" ], solve-group = "py313" }
+
 [tool.ruff]
 line-length = 120
 exclude = [
@@ -178,27 +202,3 @@ skip = [
   "docs/references.md",
   "docs/notebooks/example.ipynb",
 ]
-
-[tool.pixi]
-dependencies.python = ">=3.11"
-# 3.11 lane (for gh-actions)
-environments.dev-py311 = { features = [ "dev", "test", "py311" ], solve-group = "py311" }
-environments.docs-py311 = { features = [ "doc", "py311" ], solve-group = "py311" }
-# 3.13 lane
-environments.default = { features = [ "py313" ], solve-group = "py313" }
-environments.dev-py313 = { features = [ "dev", "test", "py313" ], solve-group = "py313" }
-environments.docs-py313 = { features = [ "doc", "py313" ], solve-group = "py313" }
-environments.test-py313 = { features = [ "test", "py313" ], solve-group = "py313" }
-# for gh-actions
-feature.py311.dependencies.python = "3.11.*"
-feature.py313.dependencies.python = "3.13.*"
-pypi-dependencies.spatialdata-plot = { path = ".", editable = true }
-tasks.lab = "jupyter lab"
-tasks.kernel-install = 'python -m ipykernel install --user --name pixi-dev --display-name "sdata-plot (dev)"'
-tasks.test = "pytest -v --color=yes --tb=short --durations=10"
-tasks.lint = "ruff check ."
-tasks.format = "ruff format ."
-tasks.pre-commit-install = "pre-commit install"
-tasks.pre-commit-run = "pre-commit run --all-files"
-workspace.channels = [ "conda-forge" ]
-workspace.platforms = [ "osx-arm64", "linux-64" ]