From 3125f58f7c9a207ab73b7ce29b2b4c9a0afbc892 Mon Sep 17 00:00:00 2001
From: Yiming Qu <57242693+whatever60@users.noreply.github.com>
Date: Tue, 4 Mar 2025 03:00:12 -0500
Subject: [PATCH] Fix picrust2-env.yaml dependencies

1. ete3 has to be installed from etetoolkit channel. conda-forge does not work, even though it is listed on https://anaconda.org/conda-forge/ete3.
2. Installing sepp 4.5.5 requires python3.10.
3. Runnning test requires typeguard 4.4.2 to be specified separately.
---
 picrust2-env.yaml | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/picrust2-env.yaml b/picrust2-env.yaml
index 1f1ec79..1bcbe7d 100644
--- a/picrust2-env.yaml
+++ b/picrust2-env.yaml
@@ -2,12 +2,15 @@ name: picrust2
 
 channels:
 - conda-forge
+- etetoolkit
 - r
 - bioconda
 - anaconda
 - defaults
 
 dependencies:
+- python >=3.10
+- r-base >=3.5.1
 - biom-format >=2.1.10
 - cython
 - epa-ng =0.3.8
@@ -23,8 +26,7 @@ dependencies:
 - pandas >=1.1.5
 - pytest >=4.4.1
 - pytest-cov >=2.6.1
-- python >=3.5
-- r-base >=3.5.1
+- typeguard =4.4.2
 - r-castor >=1.7.2
 - scipy >=1.2.1
 - sepp =4.5.5