-
Notifications
You must be signed in to change notification settings - Fork 1
Expand file tree
/
Copy pathlocality.ts
More file actions
executable file
·282 lines (256 loc) · 9.85 KB
/
Copy pathlocality.ts
File metadata and controls
executable file
·282 lines (256 loc) · 9.85 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
import { EditDataType, LocalityDetailsType } from '../types'
import { Validators, validateFields, validator } from './validator'
import { validCountries } from './countryList'
const pollenFields = ['pers_pollen_ap', 'pers_pollen_nap', 'pers_pollen_other'] as const
export const pollenTotalValidationError =
'Combined Arboreal (AP%), Non-arboreal (NAP%), and Other pollen (OP%) must be less than or equal to 100'
export const estimateTempRangeValidationError = 'Estimated temperature must be between -999.9 and 999.9'
const validatePollenPercentage = (name: string, num: number) => {
if (!Number.isInteger(num)) return `${name} must be an integer value`
if (num < 0 || num > 100) return `${name} must be between 0 and 100`
return
}
const validateNonNegativeInteger = (name: string, num: number) => {
if (!Number.isInteger(num) || num < 0) return `${name} must be a non-negative integer.`
return
}
const validateIntegerInRange = (name: string, num: number, min: number, max: number) => {
if (!Number.isInteger(num)) return `${name} must be an integer value`
if (num < min || num > max) return `${name} must be between ${min} and ${max}`
return
}
const validatePositiveInteger = (name: string, num: number) => {
if (!Number.isInteger(num) || num < 1) return `${name} must be a positive integer.`
return
}
const validateFraction = (name: string, value: string) => {
const trimmed = value.trim()
if (trimmed === '') return
const match = /^(\d+):(\d+)$/.exec(trimmed)
if (!match) return `${name} must be in format integer:integer`
const numerator = Number(match[1])
const denominator = Number(match[2])
if (!Number.isInteger(numerator) || !Number.isInteger(denominator)) return `${name} must be in format integer:integer`
if (denominator < 1) return `${name} denominator must be >= 1`
if (numerator < 1) return `${name} numerator must be >= 1`
if (numerator > denominator) return `${name} numerator must be <= denominator`
return
}
const validatePollenRecordTotal = (editData: Partial<EditDataType<LocalityDetailsType>>) => {
const values = pollenFields
.map(fieldName => editData[fieldName])
.filter((value): value is number => typeof value === 'number')
const total = values.reduce((sum, value) => sum + value, 0)
if (total > 100) return pollenTotalValidationError
return
}
const createLocalityValidators = (
editData: EditDataType<LocalityDetailsType>
): Validators<Partial<EditDataType<LocalityDetailsType>>> => {
const isAbsoluteDatingMethod = editData.date_meth === 'absolute'
const isTimeUnitDatingMethod = editData.date_meth === 'time_unit'
const isCompositeDatingMethod = editData.date_meth === 'composite'
const minUsesAbsoluteBasis = !!editData.bfa_min_abs
const minUsesTimeUnitBasis = !!editData.bfa_min
const maxUsesAbsoluteBasis = !!editData.bfa_max_abs
const maxUsesTimeUnitBasis = !!editData.bfa_max
const compositeDatingMethodNoBases =
isCompositeDatingMethod &&
!minUsesTimeUnitBasis &&
!minUsesAbsoluteBasis &&
!maxUsesTimeUnitBasis &&
!maxUsesAbsoluteBasis
const compositeDatingMethodRequiredText = 'One age row must follow the rules for Absolute, the other for Time Unit'
return {
// const isNew = editData.lid === undefined
date_meth: {
name: 'Dating method',
required: true,
},
max_age: {
name: 'Age (max)',
required: true,
asNumber: (num: number) => {
if (editData.min_age && num < editData.min_age) return 'Max value cannot be lower than min'
if (num < 0) return 'Max value must be a positive real value'
return
},
},
min_age: {
name: 'Age (min)',
required: true,
asNumber: (num: number) => {
if (editData.max_age && num > editData.max_age) return 'Min value cannot be higher than max'
if (num < 0) return 'Min value must be a positive real value'
return
},
},
bfa_min_abs: {
name: 'Basis for age (Absolute, min)',
required: () => {
if (isAbsoluteDatingMethod || (isCompositeDatingMethod && maxUsesTimeUnitBasis)) return 'This field is required'
if (compositeDatingMethodNoBases) return compositeDatingMethodRequiredText
return
},
},
bfa_max_abs: {
name: 'Basis for age (Absolute, max)',
required: () => {
if (isAbsoluteDatingMethod || (isCompositeDatingMethod && minUsesTimeUnitBasis)) return 'This field is required'
if (compositeDatingMethodNoBases) return compositeDatingMethodRequiredText
return
},
},
bfa_min: {
name: 'Basis for age (Time unit, min)',
required: () => {
if (isTimeUnitDatingMethod || (isCompositeDatingMethod && maxUsesAbsoluteBasis)) return 'This field is required'
if (compositeDatingMethodNoBases) return compositeDatingMethodRequiredText
return
},
},
bfa_max: {
name: 'Basis for age (Time unit, max)',
required: () => {
if (isTimeUnitDatingMethod || (isCompositeDatingMethod && minUsesAbsoluteBasis)) return 'This field is required'
if (compositeDatingMethodNoBases) return compositeDatingMethodRequiredText
return
},
},
loc_name: {
name: 'Locality name',
required: true,
},
country: {
name: 'Country',
required: true,
asString: (countryName: string) => {
if (!validCountries.includes(countryName)) return 'Country is not valid'
return
},
},
dms_lat: {
name: 'Latitude (dms)',
required: true,
asString: (dms_lat: string) => {
const dmsLatRegEx = /^(\d{1,3}) (\d{1,2}) (\d{1,2}) ([NS])$/
if (!dmsLatRegEx.test(dms_lat)) return 'Must be in the format DD(D) M(M) S(S) N/S'
return
},
},
dec_lat: {
name: 'Latitude (dec)',
required: true,
asNumber: (num: number) => {
if (num < -90 || num > 90) return 'Must be between -90 and 90'
return
},
},
dms_long: {
name: 'Longitude (dms)',
required: true,
asString: (dms_long: string) => {
const dmsLongRegEx = /^(\d{1,3}) (\d{1,2}) (\d{1,2}) ([EW])$/
if (!dmsLongRegEx.test(dms_long)) return 'Must be in the format DD(D) M(M) S(S) E/W'
return
},
},
dec_long: {
name: 'Longitude (dec)',
required: true,
asNumber: (num: number) => {
if (num < -180 || num > 180) return 'Must be between -180 and 180'
return
},
},
pers_pollen_ap: {
name: 'Arboreal pollen (AP%)',
asNumber: (num: number) => {
const valueError = validatePollenPercentage('Arboreal pollen (AP%)', num)
if (valueError) return valueError
const totalError = validatePollenRecordTotal(editData)
if (totalError) return totalError
return
},
},
pers_pollen_nap: {
name: 'Non-arboreal pollen (NAP%)',
asNumber: (num: number) => {
const valueError = validatePollenPercentage('Non-arboreal pollen (NAP%)', num)
if (valueError) return valueError
const totalError = validatePollenRecordTotal(editData)
if (totalError) return totalError
return
},
},
pers_pollen_other: {
name: 'Other pollen (OP%)',
asNumber: (num: number) => {
const valueError = validatePollenPercentage('Other pollen (OP%)', num)
if (valueError) return valueError
const totalError = validatePollenRecordTotal(editData)
if (totalError) return totalError
return
},
},
estimate_temp: {
name: 'Estimated temperature',
asNumber: (num: number) => {
if (num <= -1000 || num >= 1000) return estimateTempRangeValidationError
return
},
},
estimate_precip: {
name: 'Estimate of annual precipitation (mm)',
asNumber: (num: number) => validateNonNegativeInteger('Estimate of annual precipitation (mm)', num),
},
altitude: {
name: 'Altitude (m)',
asNumber: (num: number) => validateIntegerInRange('Altitude (m)', num, -500, 9000),
},
appr_num_spm: {
name: 'Approx. Number of Specimens',
asNumber: (num: number) => validatePositiveInteger('Approx. Number of Specimens', num),
},
num_spm: {
name: 'Exact Number of Specimens',
asNumber: (num: number) => validatePositiveInteger('Exact Number of Specimens', num),
},
num_quad: {
name: 'Number of Quadrats',
asNumber: (num: number) => validatePositiveInteger('Number of Quadrats', num),
},
estimate_npp: {
name: 'Estimate of net primary productivity (g/m2/yr)',
asNumber: (num: number) => validateNonNegativeInteger('Estimate of net primary productivity (g/m2/yr)', num),
},
pers_woody_cover: {
name: 'Woody cover percentage',
asNumber: (num: number) => validateIntegerInRange('Woody cover percentage', num, 0, 100),
},
frac_min: {
name: 'Minimum fraction',
condition: (data: Partial<EditDataType<LocalityDetailsType>>) =>
data.frac_min !== null && data.frac_min !== undefined && data.frac_min !== '',
asString: (value: string) => validateFraction('Minimum fraction', value),
},
frac_max: {
name: 'Maximum fraction',
condition: (data: Partial<EditDataType<LocalityDetailsType>>) =>
data.frac_max !== null && data.frac_max !== undefined && data.frac_max !== '',
asString: (value: string) => validateFraction('Maximum fraction', value),
},
}
}
export const validateLocality = (
editData: EditDataType<LocalityDetailsType>,
fieldName: keyof EditDataType<LocalityDetailsType>
) => {
const validators = createLocalityValidators(editData)
return validator<EditDataType<LocalityDetailsType>>(validators, editData, fieldName)
}
export const validateLocalityFields = (editData: Partial<EditDataType<LocalityDetailsType>>) =>
validateFields<EditDataType<LocalityDetailsType>>(
createLocalityValidators(editData as EditDataType<LocalityDetailsType>),
editData
)