beaveR/DESCRIPTION at master · NPSDC/beaveR · GitHub

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Package: beaveR
Title: Processing the output from TreeTerminus
Version: 0.99.1
Authors@R: c(
    person("Noor Pratap", "Singh", email="noorpratap@gmail.com", role = c("aut", "cre")),
    person("Michael", "Love", role = c("aut", "ctb")),
    person("Rob", "Patro", role = c("aut", "ctb"))
    )
Maintainer: Noor Pratap Singh <noorpratap@gmail.com>
Description: Given the trees obtained from TreeTerminus for an RNASeq experiment
    along with Salmon quantified counts, it creates a TreeSummarizedExperiment
    (TSE) object. Also provided is the method to obtain a cut from a tree that
    optimizes the sum of a given node metric for the nodes in the cut. Methods
    are also provided to obtain summary statistics for a given node in the tree.
License: GPL-2
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Suggests:
    testthat (>= 3.0.0)
Config/testthat/edition: 3
biocViews:
	SummarizedExperiment,
	SingleCellExperiment,
	TreeSummarizedExperiment,
	tximeta,
	fishpond,
	S4Vectors
Imports:
    ape,
    fishpond,
    Matrix,
    phangorn,
    SummarizedExperiment,
    SingleCellExperiment,
    TreeSummarizedExperiment,
    tximeta,
    abind,
    methods,
    S4Vectors,
    matrixStats,
    svMisc,
    lifecycle