Merge pull request #37 from microBioRust/main [skip ci]

merge changes for pip and crates [skip ci]

Author: LCrossman

.github/workflows/mkdocs_ci.yml

@@ -0,0 +1,91 @@
+# This workflow will upload a Python Package to PyPI when a release is created
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries
+
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+name: Release
+
+on:
+  push:
+    tags:
+      - 'v*'
+
+permissions:
+  contents: read
+
+jobs:
+  build:
+    name: Build wheels
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        include:
+          - os: ubuntu-latest
+            target: x86_64
+          - os: ubuntu-latest
+            target: aarch64
+          - os: macos-latest
+            target: x86_64
+          - os: macos-latest
+            target: aarch64
+          - os: windows-latest
+            target: x86_64
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.10'
+      - name: Build wheels
+        uses: PyO3/maturin-action@v1
+        with:
+          target: ${{ matrix.target }}
+          args: --release --out dist --find-interpreter
+          sccache: 'true'
+          manylinux: auto
+          working-directory: microbiorust-py
+      - name: Upload wheels
+        uses: actions/upload-artifact@v4
+        with:
+          name: wheels-${{ matrix.os }}-${{ matrix.target }}
+          path: microbiorust-py/dist
+
+  sdist:
+    name: Build sdist
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.10'
+      - name: Build sdist
+        uses: PyO3/maturin-action@v1
+        with:
+          command: sdist
+          args: --out dist
+          working-directory: microbiorust-py
+      - name: Upload sdist
+        uses: actions/upload-artifact@v4
+        with:
+          name: wheels-sdist
+          path: microbiorust-py/dist
+
+  publish:
+    name: Publish to PyPI
+    runs-on: ubuntu-latest
+    needs: [build, sdist]
+    environment: pypi
+    permissions:
+      id-token: write  # from Trusted Publishing
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          merge-multiple: true
+          path: dist
+      - name: Publish to PyPI
+        uses: PyO3/maturin-action@v1
+        with:
+          command: upload
+          args: --non-interactive --skip-existing dist/*

.github/workflows/release.yml

@@ -2,8 +2,7 @@
 members = [
    "microBioRust",
    "heatmap",
-   "seqmetrics", 
-   "microbiorust-py"]
+   "seqmetrics"]
 resolver = "2"
 
 [profile.dev]

Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "microBioRust"
-version = "0.1.2"
+version = "0.1.3"
 edition = "2021"
 license = "MIT"
 keywords = ["bioinformatics", "micro", "bio", "genomics", "sequence-analysis"]
@@ -13,8 +13,10 @@ categories = [
     "data-structures",
 ]
 readme = "README.md"
-exclude = [".git", ".gitignore"]
-repository = "https://github.com/LCrossman/microBioRust"
+authors = ["Lisa Crossman and microBioRust community"]
+exclude = [".git", ".gitignore", ".dribble.example.embl", "tests/data/"]
+repository = "https://github.com/microBioRust/microBioRust"
+documentation = "https://microbiorust.github.io/docs/"
 
 # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
 [lints.rust]